miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28285_ggo-mir-34a:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
>30187_ptr-mir-34a:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
>30791_ppy-mir-34a:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
>30072_ppa-mir-34a:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtgg 105
>27557_lla-mir-34a:mirbase
Length = 111
Score = 204 bits (103), Expect = 1e-53
Identities = 110/111 (99%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaag 60
Query: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 111
>27691_mml-mir-34a:mirbase
Length = 110
Score = 200 bits (101), Expect = 2e-52
Identities = 107/109 (98%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggcc 109
|||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctacacattgtggggcc 109
>28197_mne-mir-34a:mirbase
Length = 110
Score = 200 bits (101), Expect = 2e-52
Identities = 107/109 (98%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggcc 109
|||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctacacattgtggggcc 109
>27496_age-mir-34a:mirbase
Length = 111
Score = 196 bits (99), Expect = 2e-51
Identities = 109/111 (98%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgtgcaatagtgaag 60
Query: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 111
>27604_sla-mir-34a:mirbase
Length = 111
Score = 196 bits (99), Expect = 2e-51
Identities = 109/111 (98%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 ggccggctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaag 60
Query: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 110
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggccc 111
>27360_mdo-mir-34a:mirbase
Length = 111
Score = 182 bits (92), Expect = 4e-47
Identities = 102/104 (98%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taag 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaatagataag 60
Query: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgt 103
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgt 104
>25925_gga-mir-34a:mirbase
Length = 109
Score = 176 bits (89), Expect = 2e-45
Identities = 105/109 (96%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 2 gccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 gccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaagg 60
Query: 61 aagcaatcagcaagtatactgccctagaagtgctgcacgttgtggggcc 109
|||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctacacattgttgggcc 109
>33175_bta-mir-34a:mirbase
Length = 107
Score = 172 bits (87), Expect = 3e-44
Identities = 103/107 (96%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
Query: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 106
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
>32697_rno-mir-34a:mirbase
Length = 102
Score = 149 bits (75), Expect = 5e-37
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
Query: 65 aatcagcaagtatactgccctagaagtgctgcacgttgt 103
|||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
>31815_mmu-mir-34a:mirbase
Length = 102
Score = 147 bits (74), Expect = 2e-36
Identities = 96/102 (94%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 3 ccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taagga 61
|||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 1 ccagctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaagga 60
Query: 62 agcaatcagcaagtatactgccctagaagtgctgcacgttgt 103
||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 agcaatcagcaagtatactgccctagaagtgctgcacattgt 102
>26432_tgu-mir-34a:mirbase
Length = 72
Score = 127 bits (64), Expect = 2e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
Query: 71 caagtatactgc 82
||||||||||||
Sbjct: 61 caagtatactgc 72
>26663_cfa-mir-34a:mirbase
Length = 66
Score = 107 bits (54), Expect = 2e-24
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
Query: 81 gcccta 86
||||||
Sbjct: 61 gcccta 66
>25742_xtr-mir-34a:mirbase
Length = 96
Score = 87.7 bits (44), Expect = 2e-18
Identities = 85/96 (88%), Gaps = 7/96 (7%)
Strand = Plus / Plus
Query: 7 ctgtgagtgtttctttggcagtgtcttagctggttgttgtgagca----atagtaaggaa 62
||||||||||||||||||||||||||||||||||||||||| ||| |||| | | |
Sbjct: 1 ctgtgagtgtttctttggcagtgtcttagctggttgttgtg-gcacgttatag--aagta 57
Query: 63 gcaatcagcaagtatactgccctagaagtgctgcac 98
||||||||||| ||||||||||||||||| ||||||
Sbjct: 58 gcaatcagcaaatatactgccctagaagttctgcac 93
>26984_eca-mir-34:mirbase
Length = 63
Score = 85.7 bits (43), Expect = 6e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
Query: 81 gcc 83
|||
Sbjct: 61 gcc 63
>33948_ssc-mir-34a:mirbase
Length = 76
Score = 85.7 bits (43), Expect = 6e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
Query: 75 tatactgccctagaa 89
|| |||||||||||
Sbjct: 60 catcctgccctagaa 74
>34253_dre-mir-34:mirbase
Length = 98
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaaggaagca 65
|||||||||| |||| |||||||||||||||||||||||||| | | | || ||||||
Sbjct: 3 gctgtgagtggttctctggcagtgtcttagctggttgttgtgtggagtgagaacgaagca 62
Query: 66 atcagcaagtatactgcc 83
||||||||||||||||||
Sbjct: 63 atcagcaagtatactgcc 80
