miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30195_ptr-mir-98:mirbase
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 aggattctgctcatgccagggtgaggtagtaagttgtattgttgtggggtagggatatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggattctgctcatgccagggtgaggtagtaagttgtattgttgtggggtagggatatta 60
Query: 61 ggccccaattagaagataactatacaacttactactttccctggtgtgtggcatattca 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggccccaattagaagataactatacaacttactactttccctggtgtgtggcatattca 119
>26994_eca-mir-98:mirbase
Length = 119
Score = 228 bits (115), Expect = 7e-61
Identities = 118/119 (99%)
Strand = Plus / Plus
Query: 1 aggattctgctcatgccagggtgaggtagtaagttgtattgttgtggggtagggatatta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aggattctgctcatgccagggtgaggtagtaagttgtattgttgtggggtagggatttta 60
Query: 61 ggccccaattagaagataactatacaacttactactttccctggtgtgtggcatattca 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggccccaattagaagataactatacaacttactactttccctggtgtgtggcatattca 119
>33184_bta-mir-98:mirbase
Length = 119
Score = 180 bits (91), Expect = 2e-46
Identities = 112/119 (94%)
Strand = Plus / Plus
Query: 1 aggattctgctcatgccagggtgaggtagtaagttgtattgttgtggggtagggatatta 60
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aggactctgctcatgctggggtgaggtagtaagttgtattgttgtggggtagggatttta 60
Query: 61 ggccccaattagaagataactatacaacttactactttccctggtgtgtggcatattca 119
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 61 ggccccaatttgaagataactatacaacttactactttccctggtgtgtagcacattca 119
>32705_rno-mir-98:mirbase
Length = 108
Score = 174 bits (88), Expect = 9e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 13 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagata 72
Query: 79 actatacaacttactactttccctggtgtgtggcat 114
||||||||||||||||||||||||||||||||||||
Sbjct: 73 actatacaacttactactttccctggtgtgtggcat 108
>27500_age-mir-98:mirbase
Length = 80
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 81 tatacaacttactactttcc 100
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>27701_mml-mir-98:mirbase
Length = 80
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 81 tatacaacttactactttcc 100
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>28291_ggo-mir-98:mirbase
Length = 80
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 81 tatacaacttactactttcc 100
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>30078_ppa-mir-98:mirbase
Length = 80
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 81 tatacaacttactactttcc 100
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>30801_ppy-mir-98:mirbase
Length = 80
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 81 tatacaacttactactttcc 100
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>31824_mmu-mir-98:mirbase
Length = 108
Score = 159 bits (80), Expect = 6e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
|||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 13 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccagtaagaagata 72
Query: 79 actatacaacttactactttccctggtgtgtggcat 114
|||||||||||||||||||||| |||||||||||||
Sbjct: 73 actatacaacttactactttccttggtgtgtggcat 108
>26672_cfa-mir-98:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 22 tgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataact 81
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 60
Query: 82 atacaacttactactttccc 101
||||||||||||||||||||
Sbjct: 61 atacaacttactactttccc 80
>33955_ssc-mir-98:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagata 60
Query: 79 actatacaacttactacttt 98
||||||||||||||||||||
Sbjct: 61 actatacaacttactacttt 80
>31469_oan-mir-98:mirbase
Length = 149
Score = 89.7 bits (45), Expect = 4e-19
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 22 tgaggtagtaagttgtattgttgtggggtagggatat--taggccccaattagaagataa 79
||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct: 31 tgaggtagtaagttgtattgttgtggggtagggatttcttttgccccaattagc-gataa 89
Query: 80 ctatacaacttactactttccctggtgtgtgg 111
|||||||| ||||||||||||| ||||||||
Sbjct: 90 ctatacaatttactactttccccagtgtgtgg 121
>25753_xtr-mir-98:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 17 cagggtgaggtagtaagttgtattgttgtgggg 49
|||| ||||||||||||||||||||||||||||
Sbjct: 12 caggatgaggtagtaagttgtattgttgtgggg 44
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 67 aattagaagataactatacaacttactactttccctg 103
|||||| ||||||||||||| |||||| | |||||||
Sbjct: 60 aattaggagataactatacagcttactgccttccctg 96
>27321_mdo-let-7b:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 62 gccccaattagaagataactatacaacttactactttccctg 103
|||||||| |||||||||||||||||| |||| | |||||||
Sbjct: 46 gccccaatcagaagataactatacaacctactgccttccctg 87
>25871_gga-let-7b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 62 gccccaattagaagataactatacaacttactactttccctg 103
|||||||| || ||||||||||||||| |||| | |||||||
Sbjct: 44 gccccaatcaggagataactatacaacctactgccttccctg 85
>26379_tgu-let-7b:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 62 gccccaattagaagataactatacaacttactactttccctg 103
|||||||| || ||||||||||||||| |||| | |||||||
Sbjct: 49 gccccaatcaggagataactatacaacctactgccttccctg 90
>34181_dre-let-7h:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgt 45
|||||||||||||||||| |||||||
Sbjct: 17 ggtgaggtagtaagttgtgttgttgt 42
>34532_fru-let-7h:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgt 45
|||||||||||||||||| |||||||
Sbjct: 4 ggtgaggtagtaagttgtgttgttgt 29
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agataactatacaacttact 93
||||||||||||||||||||
Sbjct: 57 agataactatacaacttact 76
>34680_tni-let-7h:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgt 45
|||||||||||||||||| |||||||
Sbjct: 16 ggtgaggtagtaagttgtgttgttgt 41
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agataactatacaacttact 93
||||||||||||||||||||
Sbjct: 72 agataactatacaacttact 91
>27632_mml-let-7b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 71 agaagataactatacaacttactactttccctg 103
|||||||||||||||||| |||| | |||||||
Sbjct: 51 agaagataactatacaacctactgccttccctg 83
>30129_ptr-let-7b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 71 agaagataactatacaacttactactttccctg 103
|||||||||||||||||| |||| | |||||||
Sbjct: 50 agaagataactatacaacctactgccttccctg 82
>30734_ppy-let-7b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 71 agaagataactatacaacttactactttccctg 103
|||||||||||||||||| |||| | |||||||
Sbjct: 51 agaagataactatacaacctactgccttccctg 83
>31410_oan-let-7b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 62 gccccaattagaagataactataca 86
|||||||| ||||||||||||||||
Sbjct: 43 gccccaatcagaagataactataca 67
>26934_eca-let-7f:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtag 37
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtag 37
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtag 37
>28342_hsa-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 72 gaagataactatacaacttactactttccctg 103
||||||||||||||||| |||| | |||||||
Sbjct: 52 gaagataactatacaacctactgccttccctg 83
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtag 37
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 5 gtgaggtagtagattgtatagttgtggggtag 36
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtag 37
>31754_mmu-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 72 gaagataactatacaacttactactttccctg 103
||||||||||||||||| |||| | |||||||
Sbjct: 53 gaagataactatacaacctactgccttccctg 84
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 7 gtgaggtagtagattgtatagttgtggggtag 38
>32640_rno-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 72 gaagataactatacaacttactactttccctg 103
||||||||||||||||| |||| | |||||||
Sbjct: 53 gaagataactatacaacctactgccttccctg 84
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 7 gtgaggtagtagattgtatagttgtggggtag 38
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 87 gtgaggtagtagattgtatagttgtggggtag 56
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtag 52
||||||||||| |||||| ||||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtag 37
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agataactatacaacttact 93
||||||||||||||||||||
Sbjct: 62 agataactatacaacttact 81
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agataactatacaacttact 93
||||||||||||||||||||
Sbjct: 48 agataactatacaacttact 67
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 17 cagggtgaggtagtaagttgtattgttg 44
||||||||||||||| ||||||| ||||
Sbjct: 1 cagggtgaggtagtaggttgtatagttg 28
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agataactatacaacttact 93
||||||||||||||||||||
Sbjct: 56 agataactatacaacttact 75
