miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27863_mml-mir-363:mirbase
Length = 75
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtatcataggagaaaaattgcacggt 60
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>30967_ppy-mir-363:mirbase
Length = 75
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtatcataggagaaaaattgcacggt 60
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>34071_ssc-mir-363:mirbase
Length = 80
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3 tgttgtcgggtggatcacgatgcaattttgattagtatcataggagaaaaattgcacggt 62
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 63 atccatctgtaaacc 77
>27145_eca-mir-363:mirbase
Length = 75
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtataataggagaaaaattgcacggt 60
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>26813_cfa-mir-363:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 6 tcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggtatcca 65
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tcgggtggatcacgatgcaattttgatgagtataataggagaaaaattgcacggtatcca 60
Query: 66 tctgtaa 72
|||||||
Sbjct: 61 tctgtaa 67
>33337_bta-mir-363:mirbase
Length = 74
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtataataggagaaaaattgcacggt 60
Query: 61 atccatctg 69
|||||||||
Sbjct: 61 atccatctg 69
>26525_tgu-mir-363:mirbase
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 68 atccatctgtaaacc 82
>31548_oan-mir-363:mirbase
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 68 atccatctgtaaacc 82
>32882_rno-mir-363:mirbase
Length = 87
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
|||| ||||||||||||||||||||||||||| || | || ||||| ||||||||||||
Sbjct: 7 tgttatcgggtggatcacgatgcaattttgattagagtaatgggagagaaattgcacggt 66
Query: 61 atccatctgtaaacc 75
|||||||||||||||
Sbjct: 67 atccatctgtaaacc 81
>27444_mdo-mir-363:mirbase
Length = 89
Score = 91.7 bits (46), Expect = 6e-20
Identities = 69/74 (93%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 4 tgtcgggtggatcacgatgcaa-ttttgatgagtatcataggagaaaa-attgcacggta 61
|||||||||||||||||||||| ||||||| ||| | ||||||||||| |||||||||||
Sbjct: 9 tgtcgggtggatcacgatgcaaattttgataagtttaataggagaaaaaattgcacggta 68
Query: 62 tccatctgtaaacc 75
||||||||||||||
Sbjct: 69 tccatctgtaaacc 82
>25849_xtr-mir-363:mirbase
Length = 87
Score = 89.7 bits (45), Expect = 3e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 7 cgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggtatccat 66
||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttatttagtttggtaggagaaaaattgcacggtatccat 72
Query: 67 ctgtaaacc 75
|||||||||
Sbjct: 73 ctgtaaacc 81
>25850_xtr-mir-363:mirbase
Length = 87
Score = 89.7 bits (45), Expect = 3e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 7 cgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggtatccat 66
||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttatttagtttggtaggagaaaaattgcacggtatccat 72
Query: 67 ctgtaaacc 75
|||||||||
Sbjct: 73 ctgtaaacc 81
>32034_mmu-mir-363:mirbase
Length = 75
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 9 ggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggtatccatct 68
|||||| ||||||||||||||| | || | ||||||| |||||||||||||||||||||
Sbjct: 9 ggtggaacacgatgcaattttggttggtgtaataggaggaaaattgcacggtatccatct 68
Query: 69 gtaaacc 75
|||||||
Sbjct: 69 gtaaacc 75
>32035_mmu-mir-363:mirbase
Length = 75
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 9 ggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggtatccatct 68
|||||| ||||||||||||||| | || | ||||||| |||||||||||||||||||||
Sbjct: 9 ggtggaacacgatgcaattttggttggtgtaataggaggaaaattgcacggtatccatct 68
Query: 69 gtaaacc 75
|||||||
Sbjct: 69 gtaaacc 75
>25670_xla-mir-363:mirbase
Length = 88
Score = 75.8 bits (38), Expect = 4e-15
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 7 cgggtggatcacgatgcaattttgatga-gtatcataggagaaaaattgcacggtatcca 65
||||||||||||||||||||||| | | || | |||||||||||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
Query: 66 tctgtaaacc 75
||||||||||
Sbjct: 73 tctgtaaacc 82
>34393_dre-mir-363:mirbase
Length = 127
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 aaaaattgcacggtatccatctgtaa 72
||||||||||||||||||||||||||
Sbjct: 75 aaaaattgcacggtatccatctgtaa 100
