miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28608_hsa-mir-371:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttga 60
Query: 61 gtgttac 67
|||||||
Sbjct: 61 gtgttac 67
>30974_ppy-mir-371:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttga 60
Query: 61 gtgttac 67
|||||||
Sbjct: 61 gtgttac 67
>30975_ppy-mir-371:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttga 60
Query: 61 gtgttac 67
|||||||
Sbjct: 61 gtgttac 67
>30347_ptr-mir-371:mirbase
Length = 66
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 2 tggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgag 60
Query: 62 tgttac 67
||||||
Sbjct: 61 tgttac 66
>28609_hsa-mir-371b:mirbase
Length = 66
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 3 ggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgagt 7
Query: 63 gttac 67
|||||
Sbjct: 6 gttac 2
>28610_hsa-mir-371b:mirbase
Length = 66
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 3 ggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ggcactcaaactgtgggggcactttctgctctctggtgaaagtgccgccatcttttgagt 7
Query: 63 gttac 67
|||||
Sbjct: 6 gttac 2
>27870_mml-mir-371-1:mirbase
Length = 70
Score = 103 bits (52), Expect = 1e-23
Identities = 66/70 (94%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtg---aaagtgccgccatcttt 57
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaaaaagtgccgccatgttt 60
Query: 58 tgagtgttac 67
||||||||||
Sbjct: 61 tgagtgttac 70
>27871_mml-mir-371-1:mirbase
Length = 70
Score = 103 bits (52), Expect = 1e-23
Identities = 66/70 (94%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtg---aaagtgccgccatcttt 57
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaaaaagtgccgccatgttt 60
Query: 58 tgagtgttac 67
||||||||||
Sbjct: 61 tgagtgttac 70
>27873_mml-mir-371-2:mirbase
Length = 70
Score = 103 bits (52), Expect = 1e-23
Identities = 66/70 (94%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtg---aaagtgccgccatcttt 57
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaaaaagtgccgccatgttt 60
Query: 58 tgagtgttac 67
||||||||||
Sbjct: 61 tgagtgttac 70
>27872_mml-mir-371-2:mirbase
Length = 70
Score = 103 bits (52), Expect = 1e-23
Identities = 66/70 (94%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactttctgctctctggtg---aaagtgccgccatcttt 57
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1 gtggcactcaaactgtgggggcactttctgctctctggtgaaaaaagtgccgccatgttt 60
Query: 58 tgagtgttac 67
||||||||||
Sbjct: 61 tgagtgttac 70
>26819_cfa-mir-371:mirbase
Length = 60
Score = 58.0 bits (29), Expect = 8e-10
Identities = 54/60 (90%), Gaps = 3/60 (5%)
Strand = Plus / Minus
Query: 5 cactcaaactgtgggggcactttctgctctctggt--gaaagtgccgccatcttttgagt 62
|||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||
Sbjct: 59 cactcaaactgtgggggcactttctgttct-aggtaggaaagtgccgccattttttgagt 1
>27152_eca-mir-371:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 actcaaactgtgggggcactttctg 30
|||||||||||||||||||||||||
Sbjct: 1 actcaaactgtgggggcactttctg 25
>27153_eca-mir-371:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 actcaaactgtgggggcactttctg 30
|||||||||||||||||||||||||
Sbjct: 1 actcaaactgtgggggcactttctg 25
>33305_bta-mir-292:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gtggcactcaaactgtgggggcactt 26
|||| |||||||||||||||||||||
Sbjct: 7 gtggtactcaaactgtgggggcactt 32
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aagtgccgccatcttttgagtgttac 67
|||||||||||| |||||||||||||
Sbjct: 48 aagtgccgccatgttttgagtgttac 73
>32825_rno-mir-292:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 41 aaagtgccgccatcttttgagtgttac 67
|||||||||||| |||||||||||||
Sbjct: 50 aaagtgccgccaggttttgagtgttac 76
>32826_rno-mir-292:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 41 aaagtgccgccatcttttgagtgttac 67
|||||||||||| |||||||||||||
Sbjct: 50 aaagtgccgccaggttttgagtgttac 76
