miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28610_hsa-mir-371b:mirbase
Length = 66
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 ggtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttg 60
Query: 61 agtgcc 66
||||||
Sbjct: 61 agtgcc 66
>28607_hsa-mir-371:mirbase
Length = 67
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 8
Query: 62 gtgcc 66
|||||
Sbjct: 7 gtgcc 3
>28608_hsa-mir-371:mirbase
Length = 67
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 8
Query: 62 gtgcc 66
|||||
Sbjct: 7 gtgcc 3
>30347_ptr-mir-371:mirbase
Length = 66
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 7
Query: 62 gtgcc 66
|||||
Sbjct: 6 gtgcc 2
>30974_ppy-mir-371:mirbase
Length = 67
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 8
Query: 62 gtgcc 66
|||||
Sbjct: 7 gtgcc 3
>30975_ppy-mir-371:mirbase
Length = 67
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtaacactcaaaagatggcggcactttcaccagagagcagaaagtgcccccacagtttga 8
Query: 62 gtgcc 66
|||||
Sbjct: 7 gtgcc 3
>27870_mml-mir-371-1:mirbase
Length = 70
Score = 99.6 bits (50), Expect = 2e-22
Identities = 64/68 (94%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcacttt---caccagagagcagaaagtgcccccacagtt 58
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 70 gtaacactcaaaacatggcggcacttttttcaccagagagcagaaagtgcccccacagtt 11
Query: 59 tgagtgcc 66
||||||||
Sbjct: 10 tgagtgcc 3
>27871_mml-mir-371-1:mirbase
Length = 70
Score = 99.6 bits (50), Expect = 2e-22
Identities = 64/68 (94%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcacttt---caccagagagcagaaagtgcccccacagtt 58
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 70 gtaacactcaaaacatggcggcacttttttcaccagagagcagaaagtgcccccacagtt 11
Query: 59 tgagtgcc 66
||||||||
Sbjct: 10 tgagtgcc 3
>27873_mml-mir-371-2:mirbase
Length = 70
Score = 99.6 bits (50), Expect = 2e-22
Identities = 64/68 (94%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcacttt---caccagagagcagaaagtgcccccacagtt 58
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 70 gtaacactcaaaacatggcggcacttttttcaccagagagcagaaagtgcccccacagtt 11
Query: 59 tgagtgcc 66
||||||||
Sbjct: 10 tgagtgcc 3
>27872_mml-mir-371-2:mirbase
Length = 70
Score = 99.6 bits (50), Expect = 2e-22
Identities = 64/68 (94%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 2 gtaacactcaaaagatggcggcacttt---caccagagagcagaaagtgcccccacagtt 58
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 70 gtaacactcaaaacatggcggcacttttttcaccagagagcagaaagtgcccccacagtt 11
Query: 59 tgagtgcc 66
||||||||
Sbjct: 10 tgagtgcc 3
>26819_cfa-mir-371:mirbase
Length = 60
Score = 58.0 bits (29), Expect = 8e-10
Identities = 54/60 (90%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 7 actcaaaagatggcggcactttc--accagagagcagaaagtgcccccacagtttgagtg 64
|||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 1 actcaaaaaatggcggcactttcctacct-agaacagaaagtgcccccacagtttgagtg 59
>27152_eca-mir-371:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 39 cagaaagtgcccccacagtttgagt 63
|||||||||||||||||||||||||
Sbjct: 25 cagaaagtgcccccacagtttgagt 1
>27153_eca-mir-371:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 39 cagaaagtgcccccacagtttgagt 63
|||||||||||||||||||||||||
Sbjct: 25 cagaaagtgcccccacagtttgagt 1
>33305_bta-mir-292:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 ggtaacactcaaaagatggcggcactt 27
|||||||||||||| ||||||||||||
Sbjct: 74 ggtaacactcaaaacatggcggcactt 48
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 43 aagtgcccccacagtttgagt 63
|||||||||||||||||||||
Sbjct: 32 aagtgcccccacagtttgagt 12
>32825_rno-mir-292:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 ggtaacactcaaaagatggcggcacttt 28
|||||||||||||| ||||||||||||
Sbjct: 77 ggtaacactcaaaacctggcggcacttt 50
>32826_rno-mir-292:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 ggtaacactcaaaagatggcggcacttt 28
|||||||||||||| ||||||||||||
Sbjct: 77 ggtaacactcaaaacctggcggcacttt 50
