miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30350_ptr-mir-374a:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tacatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgta 60
Query: 61 attgtctgtgt 71
|||||||||||
Sbjct: 61 attgtctgtgt 71
>27876_mml-mir-374a:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 tacatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgta 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tacatcggccattataatacaacctgataagtgttacagcacttatcagattgtattgta 60
Query: 61 attgtctgtgta 72
||||||||||||
Sbjct: 61 attgtctgtgta 72
>30978_ppy-mir-374a:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 tacatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgta 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tacatcggccattataatacaacctgataagtgttgtagcacttatcagattgtattgta 60
Query: 61 attgtctgtgta 72
||||||||||||
Sbjct: 61 attgtctgtgta 72
>27154_eca-mir-374a:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 tacatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgta 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 tacatcggccattataatacaacctgataagtgttacagcacttatcaggttgtattgta 60
Query: 61 attgtctgtgta 72
||||||||||||
Sbjct: 61 attgtctgtgta 72
Score = 56.0 bits (28), Expect = 3e-09
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 11 attataatacaacctgataagtgttatagcacttatcagattgtattgtaat 62
|||| |||||||||||||||||| | || |||||||||| ||||||| ||||
Sbjct: 62 attacaatacaacctgataagtgctgtaacacttatcaggttgtattataat 11
>33345_bta-mir-374a:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 tacatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgta 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 tacatcggccattataatacaacctgataagtgttacagcacttatcaggttgtattgta 60
Query: 61 attgtctgtgta 72
||||||||||||
Sbjct: 61 attgtctgtgta 72
Score = 56.0 bits (28), Expect = 3e-09
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 11 attataatacaacctgataagtgttatagcacttatcagattgtattgtaat 62
|||| |||||||||||||||||| | || |||||||||| ||||||| ||||
Sbjct: 62 attacaatacaacctgataagtgctgtaacacttatcaggttgtattataat 11
>34076_ssc-mir-374a:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 3 catcggccattataatacaacctgataagtgttatagcacttatcagattgtattgtaat 62
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1 catcggccattataatacaacctgataagtgttacagcacttatcaggttgtattgtaat 60
Query: 63 tgtctgtgta 72
||||||||||
Sbjct: 61 tgtctgtgta 70
Score = 56.0 bits (28), Expect = 3e-09
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 11 attataatacaacctgataagtgttatagcacttatcagattgtattgtaat 62
|||| |||||||||||||||||| | || |||||||||| ||||||| ||||
Sbjct: 60 attacaatacaacctgataagtgctgtaacacttatcaggttgtattataat 9
>26820_cfa-mir-374a:mirbase
Length = 52
Score = 79.8 bits (40), Expect = 2e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 12 ttataatacaacctgataagtgttatagcacttatcagattgtattgtaatt 63
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct: 1 ttataatacaacctgataagtgttgtagcacttaccaggttgtattgtaatt 52
Score = 46.1 bits (23), Expect = 3e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 11 attataatacaacctgataagtgttatagcacttatcagattgtatt 57
|||| ||||||||||| |||||| || | |||||||||| |||||||
Sbjct: 51 attacaatacaacctggtaagtgctacaacacttatcaggttgtatt 5
>27155_eca-mir-374b:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 5e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtg 33
||||||||||||||||||||
Sbjct: 58 ataatacaacctgataagtg 39
>33346_bta-mir-374b:mirbase
Length = 95
Score = 61.9 bits (31), Expect = 5e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtg 33
||||||||||||||||||||
Sbjct: 69 ataatacaacctgataagtg 50
>34077_ssc-mir-374b:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 5e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 10 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtg 33
||||||||||||||||||||
Sbjct: 56 ataatacaacctgataagtg 37
>34078_ssc-mir-374b:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 5e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 10 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtg 33
||||||||||||||||||||
Sbjct: 56 ataatacaacctgataagtg 37
>32042_mmu-mir-374:mirbase
Length = 95
Score = 60.0 bits (30), Expect = 2e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
|||||||||||||| |||||||| ||||||||| ||| ||||||| | ||||||
Sbjct: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtgttatagcacttatcagattgtatt 57
||||||||||||| |||||| || | |||||| ||| |||||||
Sbjct: 69 ataatacaacctgctaagtgctagaacacttagcaggttgtatt 26
>26821_cfa-mir-374b:mirbase
Length = 52
Score = 58.0 bits (29), Expect = 8e-10
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtatt 57
|||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 2 tataatacaacctgctaagtgtcctagcacttatcaggttgtatt 46
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtg 33
||||||||||||||||||||
Sbjct: 48 ataatacaacctgataagtg 29
>32043_mmu-mir-374c:mirbase
Length = 49
Score = 58.0 bits (29), Expect = 8e-10
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtatt 57
|||||||||||||| |||||||| ||||||||| ||| |||||||
Sbjct: 48 tataatacaacctgctaagtgttctagcacttagcaggttgtatt 4
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 14 ataatacaacctgataagtgttatagcacttatcagattgtatt 57
||||||||||||| |||||| || | |||||| ||| |||||||
Sbjct: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtatt 45
>27877_mml-mir-374b:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 1e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||| ||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgctaagtgtcctagcacttagcaggttgtattatcattgtccgtgt 70
>28614_hsa-mir-374b:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 1e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||| ||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgctaagtgtcctagcacttagcaggttgtattatcattgtccgtgt 70
>28615_hsa-mir-374c:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||| ||| ||||||| | |||||| ||||
Sbjct: 59 tataatacaacctgctaagtgtcctagcacttagcaggttgtattatcattgtccgtgt 1
>30351_ptr-mir-374b:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||| ||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgctaagtgtcctagcacttagcaggttgtattatcattgtccgtgt 70
>32887_rno-mir-374:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
|||||||||||||| |||||||| ||||||||| || ||||||| | ||||||
Sbjct: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
