miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27879_mml-mir-376a-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>30980_ppy-mir-376a-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>30353_ptr-mir-376a-1:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 60
Query: 62 cgttttc 68
|||||||
Sbjct: 61 cgttttc 67
>27156_eca-mir-376a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacaatatttatgattaatcatagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>33348_bta-mir-376a:mirbase
Length = 99
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 18 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 77
Query: 61 acgttttc 68
||||||||
Sbjct: 78 acgttttc 85
>33817_oar-mir-376a:mirbase
Length = 103
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 75
Query: 61 acgttttc 68
||||||||
Sbjct: 76 acgttttc 83
>33818_oar-mir-376a:mirbase
Length = 103
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 75
Query: 61 acgttttc 68
||||||||
Sbjct: 76 acgttttc 83
>34079_ssc-mir-376a:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7 taaaaggtagattctccttctatgagtacattatttattattaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>26823_cfa-mir-376a-1:mirbase
Length = 58
Score = 115 bits (58), Expect = 4e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 7 gtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccacgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccacgt 58
>32045_mmu-mir-376a:mirbase
Length = 68
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
Query: 61 acgttttc 68
||||||||
Sbjct: 61 acgttttc 68
>32889_rno-mir-376a:mirbase
Length = 82
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
Query: 61 acgttttc 68
||||||||
Sbjct: 68 acgttttc 75
>33097_rno-mir-3595:mirbase
Length = 120
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 95 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 36
Query: 61 acgttttc 68
||||||||
Sbjct: 35 acgttttc 28
>27880_mml-mir-376a-2:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||
Sbjct: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>28618_hsa-mir-376a-2:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||
Sbjct: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>30354_ptr-mir-376a-2:mirbase
Length = 79
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||
Sbjct: 6 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 65
Query: 61 acgttttc 68
||||||||
Sbjct: 66 acgttttc 73
>30981_ppy-mir-376a-2:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||
Sbjct: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>33351_bta-mir-376d:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 1e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 7 taaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
|| |||||
Sbjct: 67 acattttc 74
>26824_cfa-mir-376a-2:mirbase
Length = 58
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 gtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccacgt 64
||||||| ||||||||||| ||| | || ||| ||||||||||||||||||||||||
Sbjct: 1 gtagattttccttctatgattacgtgtttgatggttaatcatagaggaaaatccacgt 58
>26827_cfa-mir-376c:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 3e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||| ||| |||||||||| || ||||||||| |||| ||||||||||| |||
Sbjct: 10 taaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcc 69
Query: 61 acgttttc 68
||||||||
Sbjct: 70 acgttttc 77
>33823_oar-mir-376d:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 3e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| |||||||||| ||| || |||||||||||||||||||||||
Sbjct: 23 taaaaggtagattttccttctatggttacgggtttggtgattaatcatagaggaaaatcc 82
Query: 61 acgttttc 68
|| |||||
Sbjct: 83 acattttc 90
>27882_mml-mir-376c:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 61
||||||| ||| |||||||||| || ||||||||| |||| ||||||||||| ||||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 62 cgtttt 67
||||||
Sbjct: 61 cgtttt 66
>28620_hsa-mir-376c:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 61
||||||| ||| |||||||||| || ||||||||| |||| ||||||||||| ||||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 62 cgtttt 67
||||||
Sbjct: 61 cgtttt 66
>30983_ppy-mir-376c:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 61
||||||| ||| |||||||||| || ||||||||| |||| ||||||||||| ||||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 62 cgtttt 67
||||||
Sbjct: 61 cgtttt 66
>33821_oar-mir-376c:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 5e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 31 ttatttatgattaatcatagaggaaaatccacgttttc 68
||||||||| |||| ||||||||||| |||||||||||
Sbjct: 47 ttatttatggttaaacatagaggaaattccacgttttc 84
>33822_oar-mir-376c:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 5e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 31 ttatttatgattaatcatagaggaaaatccacgttttc 68
||||||||| |||| ||||||||||| |||||||||||
Sbjct: 47 ttatttatggttaaacatagaggaaattccacgttttc 84
>30356_ptr-mir-376c:mirbase
Length = 65
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 31 ttatttatgattaatcatagaggaaaatccacgtttt 67
||||||||| |||| ||||||||||| ||||||||||
Sbjct: 29 ttatttatggttaaacatagaggaaattccacgtttt 65
>32892_rno-mir-376c:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 32 tatttatgattaatcatagaggaaaatccacgttttc 68
||||||||||||| ||||||||||| | |||||||||
Sbjct: 40 tatttatgattaaacatagaggaaatttcacgttttc 76
>26825_cfa-mir-376a-3:mirbase
Length = 59
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgt 64
||||||||||||||||||||||||
Sbjct: 36 ttaatcatagaggaaaatccacgt 59
>27881_mml-mir-376b:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgttttc 68
||||||||||||||||||||| ||||||
Sbjct: 59 ttaatcatagaggaaaatccatgttttc 86
>28619_hsa-mir-376b:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgttttc 68
||||||||||||||||||||| ||||||
Sbjct: 59 ttaatcatagaggaaaatccatgttttc 86
>30355_ptr-mir-376b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgttttc 68
||||||||||||||||||||| ||||||
Sbjct: 58 ttaatcatagaggaaaatccatgttttc 85
>33350_bta-mir-376c:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||| ||| |||||||||| || |||||| || |||| ||||||||||| |||
Sbjct: 10 taaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattcc 69
Query: 61 acgttttc 68
||||||||
Sbjct: 70 acgttttc 77
>34081_ssc-mir-376c:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||| ||| |||||||||| || |||||| || |||| ||||||||||| |||
Sbjct: 5 taaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattcc 64
Query: 61 acgttttc 68
||||||||
Sbjct: 65 acgttttc 72
>26826_cfa-mir-376b:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
>27157_eca-mir-376b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||||||||| ||||||
Sbjct: 49 taatcatagaggaaaatccatgttttc 75
>30982_ppy-mir-376b:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||||||||| ||||||
Sbjct: 60 taatcatagaggaaaatccatgttttc 86
>33349_bta-mir-376b:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||||||||| ||||||
Sbjct: 54 taatcatagaggaaaatccatgttttc 80
>33819_oar-mir-376b:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
>33820_oar-mir-376b:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||||||||| ||||||
Sbjct: 59 taatcatagaggaaaatccatgttttc 85
>27158_eca-mir-376c:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 34 tttatgattaatcatagaggaaaatccacgtttt 67
|||||| |||| ||||||||||| ||||||||||
Sbjct: 33 tttatggttaaacatagaggaaattccacgtttt 66
>34080_ssc-mir-376b:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 31 ttatttatgattaatcatagaggaaaatccacgttttc 68
|||||| || |||| ||||||||||| |||||||||||
Sbjct: 35 ttatttgtggttaaacatagaggaaattccacgttttc 72
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||| |||||| |||||
Sbjct: 49 taatcatagaggaacatccactttttc 75
>32047_mmu-mir-376c:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 38 tgattaatcatagaggaaaatccacgttttc 68
||||||| ||||||||||| | |||||||||
Sbjct: 47 tgattaaacatagaggaaatttcacgttttc 77
>32890_rno-mir-376b:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||| |||||| |||||
Sbjct: 51 taatcatagaggaacatccactttttc 77
>32891_rno-mir-376b:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 taatcatagaggaaaatccacgttttc 68
|||||||||||||| |||||| |||||
Sbjct: 51 taatcatagaggaacatccactttttc 77
