miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34083_ssc-mir-378-2:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 9e-06
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 aaagagcactggacttggaggcagaa 52
|||||||||||||||||||| |||||
Sbjct: 37 aaagagcactggacttggagtcagaa 62
>34082_ssc-mir-378-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 4e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 24 tggaaagagcactggacttggaggcagaa 52
|||||| |||||||||||||||| |||||
Sbjct: 39 tggaaatagcactggacttggagtcagaa 67
>33354_bta-mir-378-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 agagcactggacttggaggcagaa 52
|||||||||||||||||| |||||
Sbjct: 3 agagcactggacttggagtcagaa 26
>26829_cfa-mir-378:mirbase
Length = 60
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 31 gaaatagcactggacttggagtcagaa 57
>27160_eca-mir-378:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 35 gaaatagcactggacttggagtcagaa 61
>27884_mml-mir-378:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 35 gaaatagcactggacttggagtcagaa 61
>28622_hsa-mir-378:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 35 gaaatagcactggacttggagtcagaa 61
>28628_hsa-mir-378f:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 30 gagcactggacttggaggcagaa 52
||||||||||||||||| |||||
Sbjct: 48 gagcactggacttggagccagaa 70
>30358_ptr-mir-378:mirbase
Length = 65
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 34 gaaatagcactggacttggagtcagaa 60
>32049_mmu-mir-378:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 35 gaaatagcactggacttggagtcagaa 61
>32894_rno-mir-378:mirbase
Length = 65
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 34 gaaatagcactggacttggagtcagaa 60
>33046_rno-mir-3557:mirbase
Length = 113
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 54 gaaatagcactggacttggagtcagaa 28
>33047_rno-mir-3557:mirbase
Length = 113
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 54 gaaatagcactggacttggagtcagaa 28
>33353_bta-mir-378:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26 gaaagagcactggacttggaggcagaa 52
|||| |||||||||||||||| |||||
Sbjct: 35 gaaatagcactggacttggagtcagaa 61
