miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30359_ptr-mir-379:mirbase
Length = 66
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 2 gagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccact 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccact 60
Query: 62 aactct 67
||||||
Sbjct: 61 aactct 66
>27885_mml-mir-379:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 61 taactct 67
|||||||
Sbjct: 61 taactct 67
>30986_ppy-mir-379:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 61 taactct 67
|||||||
Sbjct: 61 taactct 67
>27161_eca-mir-379:mirbase
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggctttatgatttttgacctatgtaacatggtccac 60
Query: 61 taactct 67
|||||||
Sbjct: 61 taactct 67
>32051_mmu-mir-379:mirbase
Length = 66
Score = 109 bits (55), Expect = 2e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatg-tttttgacctatgtaacatggtccac 59
Query: 61 taactct 67
|||||||
Sbjct: 60 taactct 66
>32895_rno-mir-379:mirbase
Length = 85
Score = 109 bits (55), Expect = 2e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 agaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccac 69
Query: 61 taactct 67
|||||||
Sbjct: 70 taactct 76
>33355_bta-mir-379:mirbase
Length = 86
Score = 109 bits (55), Expect = 2e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 11 agagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccac 70
Query: 61 taactct 67
|||||||
Sbjct: 71 taactct 77
>33828_oar-mir-379:mirbase
Length = 126
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
Query: 61 taactct 67
|||||||
Sbjct: 98 taactct 104
>33829_oar-mir-379:mirbase
Length = 126
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
Query: 61 taactct 67
|||||||
Sbjct: 98 taactct 104
>26830_cfa-mir-379:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 6 tggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccactaac 64
|||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 1 tggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccactaac 59
>33842_oar-mir-411b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tgacctatgtaacatggtccactaa 63
|||| ||||||||||||||||||||
Sbjct: 54 tgacgtatgtaacatggtccactaa 78
>33843_oar-mir-411b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tgacctatgtaacatggtccactaa 63
|||| ||||||||||||||||||||
Sbjct: 54 tgacgtatgtaacatggtccactaa 78
