miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30360_ptr-mir-380:mirbase
Length = 60
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 2 agatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatctt 60
>27886_mml-mir-380:mirbase
Length = 61
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacgtct 60
Query: 61 t 61
|
Sbjct: 61 t 61
>30987_ppy-mir-380:mirbase
Length = 60
Score = 111 bits (56), Expect = 5e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccac 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccac 56
>32052_mmu-mir-380:mirbase
Length = 61
Score = 97.6 bits (49), Expect = 8e-22
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
Query: 61 t 61
|
Sbjct: 61 t 61
>32053_mmu-mir-380:mirbase
Length = 61
Score = 97.6 bits (49), Expect = 8e-22
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
Query: 61 t 61
|
Sbjct: 61 t 61
>32896_rno-mir-380:mirbase
Length = 77
Score = 97.6 bits (49), Expect = 8e-22
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
Query: 61 t 61
|
Sbjct: 68 t 68
>33073_rno-mir-3579:mirbase
Length = 113
Score = 97.6 bits (49), Expect = 8e-22
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 89 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 30
Query: 61 t 61
|
Sbjct: 29 t 29
>26831_cfa-mir-380:mirbase
Length = 57
Score = 89.7 bits (45), Expect = 2e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 4 atggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccac 56
||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 1 atggttgaccatagaacatgcgctagctctatgtcgtatgtaatatggtccac 53
>33356_bta-mir-380:mirbase
Length = 61
Score = 89.7 bits (45), Expect = 2e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60
Query: 61 t 61
|
Sbjct: 61 t 61
>33357_bta-mir-380:mirbase
Length = 61
Score = 89.7 bits (45), Expect = 2e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60
Query: 61 t 61
|
Sbjct: 61 t 61
>33830_oar-mir-380:mirbase
Length = 103
Score = 81.8 bits (41), Expect = 5e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
Query: 61 t 61
|
Sbjct: 80 t 80
>33831_oar-mir-380:mirbase
Length = 103
Score = 81.8 bits (41), Expect = 5e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
Query: 61 t 61
|
Sbjct: 80 t 80
>27162_eca-mir-380:mirbase
Length = 61
Score = 73.8 bits (37), Expect = 1e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
|||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||
Sbjct: 1 aagacggttgaccatagagcatgcgctgtctctaggtcgtatgtaatatggtccacgtct 60
Query: 61 t 61
|
Sbjct: 61 t 61
