miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30991_ppy-mir-384:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 tgttaaatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttaaatcaggaattgtaaacaattcctagacaatatgtataatgttcataagtcattc 60
Query: 61 ctagaaattgttcataatgcctgtaaca 88
||||||||| ||||||||||||||||||
Sbjct: 61 ctagaaatttttcataatgcctgtaaca 88
>27890_mml-mir-384:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 tgttaaatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattc 60
|||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1 tgttaaattaggaattgtaaacaattcctaggcaatatgtataatgttcataagacattc 60
Query: 61 ctagaaattgttcataatgcctgtaaca 88
||||||||||||||||||||||||||||
Sbjct: 61 ctagaaattgttcataatgcctgtaaca 88
>32057_mmu-mir-384:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 tgttaaatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattc 60
|||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 1 tgttaaatcaggaattgtaaacaattcctaggcaatgtgtataatgttggtaagtcattc 60
Query: 61 ctagaaattgttcataatgcctgtaaca 88
|||||||||||||| |||||||||||||
Sbjct: 61 ctagaaattgttcacaatgcctgtaaca 88
>32058_mmu-mir-384:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 tgttaaatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattc 60
|||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 1 tgttaaatcaggaattgtaaacaattcctaggcaatgtgtataatgttggtaagtcattc 60
Query: 61 ctagaaattgttcataatgcctgtaaca 88
|||||||||||||| |||||||||||||
Sbjct: 61 ctagaaattgttcacaatgcctgtaaca 88
>27166_eca-mir-384:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 1 tgttaaatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattc 60
||||||||||||| || |||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 1 tgttaaatcaggagttgtaaacaattcctaggcaatgtgtataatgtttgtaagtcattc 60
Query: 61 ctagaaattgttcataatgcctgtaaca 88
|||||||||||||| |||||||||||||
Sbjct: 61 ctagaaattgttcacaatgcctgtaaca 88
>32900_rno-mir-384:mirbase
Length = 83
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 6 aatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattcctaga 65
||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct: 1 aatcaggaattgtaaacaattcctaggcaatgtgtataatgttggtaagtcattcctaga 60
Query: 66 aattgttcataatgcctgtaaca 88
||||||||| |||||||||||||
Sbjct: 61 aattgttcacaatgcctgtaaca 83
>32901_rno-mir-384:mirbase
Length = 83
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 6 aatcaggaattttaaacaattcctagacaatatgtataatgttcataagtcattcctaga 65
||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct: 1 aatcaggaattgtaaacaattcctaggcaatgtgtataatgttggtaagtcattcctaga 60
Query: 66 aattgttcataatgcctgtaaca 88
||||||||| |||||||||||||
Sbjct: 61 aattgttcacaatgcctgtaaca 83
>26835_cfa-mir-384:mirbase
Length = 63
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 18 taaacaattcctagacaatatgtataatgttcataagtcattcctagaaattgttca 74
|||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 3 taaacaattcctaggcaatgtgtataatgtttgtaagtcattcctagaaattgttca 59
