miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30994_ppy-mir-410:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
Query: 61 gatggcctgttttcagtacc 80
||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacc 80
>30365_ptr-mir-410:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 2 gtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 60
Query: 62 atggcctgttttcagtacc 80
|||||||||||||||||||
Sbjct: 61 atggcctgttttcagtacc 79
>27893_mml-mir-410:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgaggagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
Query: 61 gatggcctgttttcagtacc 80
||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacc 80
>33363_bta-mir-410:mirbase
Length = 81
Score = 127 bits (64), Expect = 1e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 60
Query: 61 gatggcctgttttcagtacc 80
||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacc 80
>33838_oar-mir-410:mirbase
Length = 126
Score = 127 bits (64), Expect = 1e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 33 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 91
Query: 61 gatggcctgttttcagtacc 80
||||||||||||||||||||
Sbjct: 92 gatggcctgttttcagtacc 111
>33839_oar-mir-410:mirbase
Length = 126
Score = 127 bits (64), Expect = 1e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 33 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 91
Query: 61 gatggcctgttttcagtacc 80
||||||||||||||||||||
Sbjct: 92 gatggcctgttttcagtacc 111
>32061_mmu-mir-410:mirbase
Length = 81
Score = 119 bits (60), Expect = 3e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 60
Query: 61 gatggcctgttttcagtacc 80
||||||||||||||| ||||
Sbjct: 61 gatggcctgttttcaatacc 80
>27169_eca-mir-410:mirbase
Length = 74
Score = 115 bits (58), Expect = 5e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 7 tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 59
Query: 67 ctgttttcagtacc 80
|||| |||||||||
Sbjct: 60 ctgtcttcagtacc 73
>32904_rno-mir-410:mirbase
Length = 76
Score = 115 bits (58), Expect = 5e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 7 tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 tgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 62
Query: 67 ctgttttcagtacc 80
||||||||| ||||
Sbjct: 63 ctgttttcaatacc 76
>26837_cfa-mir-410:mirbase
Length = 56
Score = 89.7 bits (45), Expect = 3e-19
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 14 aggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggcctgt 70
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 aggttgtctgtgatgagttcgcttt-attaatgccgaatataacacagatggcctgt 56
