miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30995_ppy-mir-411:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 61 ggtccactaaccctcagtatcaaatccatccccgag 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatcaaatccatccccgag 96
>30366_ptr-mir-411:mirbase
Length = 95
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 2 ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 60
Query: 62 gtccactaaccctcagtatcaaatccatccccgag 96
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtccactaaccctcagtatcaaatccatccccgag 95
>33840_oar-mir-411a:mirbase
Length = 125
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
Query: 61 ggtccactaaccctcagtatcaaatccatccccgag 96
||||||||||||||||||||||||||| ||| ||||
Sbjct: 90 ggtccactaaccctcagtatcaaatccgtcctcgag 125
>33841_oar-mir-411a:mirbase
Length = 125
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
Query: 61 ggtccactaaccctcagtatcaaatccatccccgag 96
||||||||||||||||||||||||||| ||| ||||
Sbjct: 90 ggtccactaaccctcagtatcaaatccgtcctcgag 125
>27170_eca-mir-411:mirbase
Length = 82
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 61 ggtccactaaccctcagtatca 82
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>27894_mml-mir-411:mirbase
Length = 82
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 61 ggtccactaaccctcagtatca 82
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>32062_mmu-mir-411:mirbase
Length = 82
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 61 ggtccactaaccctcagtatca 82
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>33364_bta-mir-411:mirbase
Length = 82
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 61 ggtccactaaccctcagtatca 82
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>32905_rno-mir-411:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 6 cttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtcc 60
Query: 66 actaaccctcagtatc 81
||||||||||||||||
Sbjct: 61 actaaccctcagtatc 76
>34087_ssc-mir-411:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 6 cttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtcc 60
Query: 66 actaaccctcagtatc 81
||||||||||||||||
Sbjct: 61 actaaccctcagtatc 76
>26838_cfa-mir-411:mirbase
Length = 58
Score = 115 bits (58), Expect = 6e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 15 atagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccactaacc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccactaacc 58
>33828_oar-mir-379:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatcaaatcc 87
|||| ||||||||||||||||||||| ||||||||| |||||
Sbjct: 76 tgacctatgtaacacggtccactaactctcagtatccaatcc 117
>33829_oar-mir-379:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatcaaatcc 87
|||| ||||||||||||||||||||| ||||||||| |||||
Sbjct: 76 tgacctatgtaacacggtccactaactctcagtatccaatcc 117
>33451_bta-mir-758:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatcaaatcc 87
||||||||| |||| ||| ||| || ||||||||||||||||||||| |||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatctaatcc 88
>26903_cfa-mir-758:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 33 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 80
>27261_eca-mir-758:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
>28997_hsa-mir-758:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
>30594_ptr-mir-758:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 81
>31240_ppy-mir-758:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
>32895_rno-mir-379:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcagtatc 83
>33355_bta-mir-379:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 49 tgacctatgtaacatggtccactaactctcagtatc 84
>33880_oar-mir-758:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ggtccactaaccctcagtatcaaatcc 87
||||||||||||||||||||| |||||
Sbjct: 68 ggtccactaaccctcagtatctaatcc 94
>33881_oar-mir-758:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ggtccactaaccctcagtatcaaatcc 87
||||||||||||||||||||| |||||
Sbjct: 68 ggtccactaaccctcagtatctaatcc 94
>32346_mmu-mir-758:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ggtccactaaccctcagtatc 81
|||||||||||||||||||||
Sbjct: 59 ggtccactaaccctcagtatc 79
>32990_rno-mir-758:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ggtccactaaccctcagtatc 81
|||||||||||||||||||||
Sbjct: 57 ggtccactaaccctcagtatc 77
>33842_oar-mir-411b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaa 70
|||||||||||||| ||||||||||
Sbjct: 54 tgacgtatgtaacatggtccactaa 78
>33843_oar-mir-411b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tgacgtatgtaacacggtccactaa 70
|||||||||||||| ||||||||||
Sbjct: 54 tgacgtatgtaacatggtccactaa 78
>34134_ssc-mir-758:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ggtccactaaccctcagtatc 81
|||||||||||||||||||||
Sbjct: 56 ggtccactaaccctcagtatc 76
>28113_mml-mir-758:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
||||||||| |||| ||| ||| || ||||||||| |||||||||||
Sbjct: 35 acgctttatatgtgccgtttgtgacctggtccactacccctcagtatc 82
