miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30369_ptr-mir-422a:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gagagaagcactggacttagggtcagaaggcctgagtctctctgctgcagatgggctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagagaagcactggacttagggtcagaaggcctgagtctctctgctgcagatgggctctc 60
Query: 61 tgtccctgagccaagctttgtcctccctg 89
|||||||||||||||||||||||||||||
Sbjct: 61 tgtccctgagccaagctttgtcctccctg 89
>30998_ppy-mir-422a:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gagagaagcactggacttagggtcagaaggcctgagtctctctgctgcagatgggctctc 60
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gagagaagcactggactgagggtcagaaggcctgagtgtctctgctgcagatgggctctc 60
Query: 61 tgtccctgagccaagctttgtcctccctgg 90
||||||||||||||||||||||||||||||
Sbjct: 61 tgtccctgagccaagctttgtcctccctgg 90
>27897_mml-mir-422a:mirbase
Length = 90
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 gagagaagcactggacttagggtcagaaggcctgagtctctctgctgcagatgggctctc 60
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
Sbjct: 1 gagagaagcactggactcagggtcagaaggcctgagtctccctgctgcagatgggctgtg 60
Query: 61 tgtccctgagccaagctttgtcctccctgg 90
|||||||||||||||| |||||||||||||
Sbjct: 61 tgtccctgagccaagccttgtcctccctgg 90
>33046_rno-mir-3557:mirbase
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 7 agcactggacttagggtcagaaggcctgagt 37
|||||||||||| | ||||||||||||||||
Sbjct: 49 agcactggacttggagtcagaaggcctgagt 19
>33047_rno-mir-3557:mirbase
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 7 agcactggacttagggtcagaaggcctgagt 37
|||||||||||| | ||||||||||||||||
Sbjct: 49 agcactggacttggagtcagaaggcctgagt 19
>34082_ssc-mir-378-1:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 agcactggacttagggtcagaaggcctg 34
|||||||||||| | |||||||||||||
Sbjct: 46 agcactggacttggagtcagaaggcctg 73
