miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31003_ppy-mir-429:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cgccggccgatgggcgtcttaccagacatggttagacctggccctctgtctaatactgtc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cgccggccgatgggcgtcttaccagacatggttagacctggccgtctgtctaatactgtc 60
Query: 61 tggtaaaaccgtccatccgc 80
||||||||||||||||||||
Sbjct: 61 tggtaaaaccgtccatccgc 80
>27902_mml-mir-429:mirbase
Length = 83
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 cgccggccgatgggcgtcttaccagacatggttagacctggccctctgtctaatactgtc 60
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 1 cgccggccgatgagcgtcttaccagacacggttagacctggctctctgtctaatactgtc 60
Query: 61 tggtaaaaccgtccatccgc 80
||||||||||||||||||||
Sbjct: 61 tggtaaaaccgtccatccgc 80
>33372_bta-mir-429:mirbase
Length = 84
Score = 91.7 bits (46), Expect = 7e-20
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 6 gccgatgggcgtcttaccagacatggttagacctgg-ccctctgtctaatactgtctggt 64
||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||
Sbjct: 6 gccgatgggcgtcttaccagacacggttagatctggtccttctgtctaatactgtctggt 65
Query: 65 aaaaccgtccatcc 78
|| ||||||||||
Sbjct: 66 aatgccgtccatcc 79
>32069_mmu-mir-429:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagacctggc--cctctgtctaatactgtctggtaaaaccgtc 73
||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 14 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 73
Query: 74 catcc 78
|||||
Sbjct: 74 catcc 78
>25673_xla-mir-429:mirbase
Length = 68
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagacctggc--cctctgtctaatactgtctggtaaaaccgtc 73
||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
Query: 74 cat 76
|||
Sbjct: 66 cat 68
>27176_eca-mir-429:mirbase
Length = 67
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 12 gggcgtcttaccagacatggttagacctgg--ccctctgtctaatactgtctggtaaaac 69
||||||||||||||||| ||||||| ||| || |||||||||||||||||||||| |
Sbjct: 1 gggcgtcttaccagacacggttagatctgcgtccttctgtctaatactgtctggtaatgc 60
Query: 70 cgtccat 76
|||||||
Sbjct: 61 cgtccat 67
>34094_ssc-mir-429:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 6 gccgatgggcgtcttaccagacatggttagacctggccct-ctgtctaatactgtctggt 64
||||||||| |||||||||| || ||||||| |||| || |||||||||||||||||||
Sbjct: 4 gccgatgggtgtcttaccaggcacggttagatctggttcttctgtctaatactgtctggt 63
Query: 65 aaaaccgtccat 76
|| ||||||||
Sbjct: 64 aatgccgtccat 75
>32910_rno-mir-429:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagacctggccct--ctgtctaatactgtctggtaaaaccgtc 73
||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
Query: 74 catcc 78
|||||
Sbjct: 76 catcc 80
>26843_cfa-mir-429:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 gatgggcgtcttaccagacatggttagacctgg 41
|||||||||||||||||||| ||||||| ||||
Sbjct: 9 gatgggcgtcttaccagacacggttagatctgg 41
>34400_dre-mir-429:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 gatgggcgtcttaccagacatggttaga 36
||||| ||||||||||||||||||||||
Sbjct: 7 gatggacgtcttaccagacatggttaga 34
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaaaaccgtccatc 77
|||||||||||||||||||| |||||||||
Sbjct: 47 tgtctaatactgtctggtaatgccgtccatc 77
>34652_fru-mir-429:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ggcgtcttaccagacatggttaga 36
||||||||||||||||||||||||
Sbjct: 11 ggcgtcttaccagacatggttaga 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaaaaccgtccat 76
|||||||||||||||||||| ||||||||
Sbjct: 47 tgtctaatactgtctggtaatgccgtccat 76
>34800_tni-mir-429:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ggcgtcttaccagacatggttaga 36
||||||||||||||||||||||||
Sbjct: 13 ggcgtcttaccagacatggttaga 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaaaaccgtccat 76
|||||||||||||||||||| ||||||||
Sbjct: 49 tgtctaatactgtctggtaatgccgtccat 78
>26026_gga-mir-429:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 tctgtctaatactgtctggtaa 66
||||||||||||||||||||||
Sbjct: 46 tctgtctaatactgtctggtaa 67
>27450_mdo-mir-429:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 tctgtctaatactgtctggtaa 66
||||||||||||||||||||||
Sbjct: 39 tctgtctaatactgtctggtaa 60
>25860_xtr-mir-429:mirbase
Length = 87
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 gtctaatactgtctggtaa 66
|||||||||||||||||||
Sbjct: 50 gtctaatactgtctggtaa 68
>31552_oan-mir-429:mirbase
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 gtctaatactgtctggtaa 66
|||||||||||||||||||
Sbjct: 61 gtctaatactgtctggtaa 79
