miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31007_ppy-mir-448:mirbase
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gccgggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatataagaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatataagaggg 60
Query: 61 ggctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
>30376_ptr-mir-448:mirbase
Length = 110
Score = 218 bits (110), Expect = 7e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 2 ccgggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatataagagggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatataagagggg 60
Query: 62 gctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 110
>32914_rno-mir-448:mirbase
Length = 112
Score = 184 bits (93), Expect = 9e-48
Identities = 106/109 (97%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagaggggg 63
Query: 63 ctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 64 ctggctggttgcatatgtaggatgtcccatctcccggcccacttcgtca 112
>27906_mml-mir-448:mirbase
Length = 111
Score = 182 bits (92), Expect = 4e-47
Identities = 109/112 (97%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 1 gccgggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 1 gccgggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatactaaga-g 59
Query: 60 gggctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 60 gggctggctggttgcatatgtaggatgtcccatctcccagcctacttcgtca 111
>32075_mmu-mir-448:mirbase
Length = 112
Score = 174 bits (88), Expect = 9e-45
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 63
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
Query: 64 tggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
>32076_mmu-mir-448:mirbase
Length = 112
Score = 174 bits (88), Expect = 9e-45
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 63
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
Query: 64 tggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
>27180_eca-mir-448:mirbase
Length = 109
Score = 161 bits (81), Expect = 1e-40
Identities = 100/105 (95%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 5 gggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagaggggg 64
Query: 63 ctggctggttgcatatgtaggatgtcccatctcccagcccacttc 107
||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 65 ctggctggttgcatatgtaggatgtcccatctccccgcccgcttc 109
>26846_cfa-mir-448:mirbase
Length = 110
Score = 159 bits (80), Expect = 5e-40
Identities = 99/104 (95%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatataagagggggc 63
||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatacta-agggggc 62
Query: 64 tggctggttgcatatgtaggatgtcccatctcccagcccacttc 107
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 63 tggctggttgcatatgtaggatgtcccatctccccgcccacttc 106
>33376_bta-mir-448:mirbase
Length = 111
Score = 149 bits (75), Expect = 5e-37
Identities = 91/95 (95%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaaggggggg 63
Query: 63 ctggctggttgcatatgtaggatgtcccatctccc 97
||||||||||||||||||||||||||||||||||
Sbjct: 64 ttggctggttgcatatgtaggatgtcccatctccc 98
