miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30378_ptr-mir-449b:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 2 gacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagccac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagccac 60
Query: 62 aactaccctgccacttgcttctggataaattcttct 97
||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactaccctgccacttgcttctggataaattcttct 96
>27908_mml-mir-449b:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagcca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgagtcaagtcagcagcca 60
Query: 61 caactaccctgccacttgcttctggataaattcttct 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 caactaccctgccacttgcttctggataaattcttct 97
>31009_ppy-mir-449b:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagcca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttggtcaagtcagcagcca 60
Query: 61 caactaccctgccacttgcttctggataaattcttct 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 caactaccctgccacttgcttctggataaattcttct 97
>33378_bta-mir-449b:mirbase
Length = 98
Score = 163 bits (82), Expect = 3e-41
Identities = 95/98 (96%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctt-gggtcaagtcagcagcc 59
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
Query: 60 acaactaccctgccacttgcttctggataaattcttct 97
|||||| |||||||||||||||||||||||||||||||
Sbjct: 61 acaactgccctgccacttgcttctggataaattcttct 98
>32078_mmu-mir-449b:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 1e-15
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 13 ggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaactaccctg 71
|||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
Query: 72 ccacttgcttctgg 85
|||||| |||||||
Sbjct: 66 ccacttccttctgg 79
>26847_cfa-mir-449:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>27181_eca-mir-449a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 2 ggcagtgtattgttagctgg 21
>27451_mdo-mir-449:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 12 ggcagtgtattgttagctgg 31
>27907_mml-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>28654_hsa-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>28656_hsa-mir-449c:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagc 33
||||||||||||||||||| ||||
Sbjct: 12 tcaggtaggcagtgtattgctagc 35
>31008_ppy-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>32077_mmu-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>32915_rno-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>33377_bta-mir-449a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 14 ggcagtgtattgttagctgg 33
