miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30379_ptr-mir-450a-1:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaa 60
Query: 61 cattttgcatgtatagttttgtatcaatat 90
||||||||||||||||||||||||||||||
Sbjct: 61 cattttgcatgtatagttttgtatcaatat 90
>31010_ppy-mir-450a-1:mirbase
Length = 91
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaa 60
Query: 61 cattttgcatgtatagttttgtatcaatata 91
||||||||||||||||||| |||||||||||
Sbjct: 61 cattttgcatgtatagtttggtatcaatata 91
>27909_mml-mir-450a-1:mirbase
Length = 91
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 5 gatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacatt 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacatt 64
Query: 65 ttgcatgtatagttttgtatcaatata 91
|||||||| ||||||||||||||||||
Sbjct: 65 ttgcatgtgtagttttgtatcaatata 91
>27182_eca-mir-450a:mirbase
Length = 91
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 9 ctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgc 68
Query: 69 atgtatagttttgtatcaatata 91
||| || ||||||||||||||||
Sbjct: 69 atgcatggttttgtatcaatata 91
>33382_bta-mir-450-1:mirbase
Length = 82
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatgtatag 76
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || |
Sbjct: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgcatgg 64
Query: 77 ttttgtatcaatata 91
|||||||||||||||
Sbjct: 65 ttttgtatcaatata 79
>34097_ssc-mir-450a:mirbase
Length = 106
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
|||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 19 ctaaactggttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgc 78
Query: 69 atgtatagttttgtatcaatata 91
||| || ||||||||||| ||||
Sbjct: 79 atgcatggttttgtatcactata 101
>26848_cfa-mir-450a:mirbase
Length = 91
Score = 111 bits (56), Expect = 9e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatg 71
||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||
Sbjct: 12 aactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggagcattttgcatg 71
Query: 72 tatagttttgtatcaatata 91
|| ||||||||||||||||
Sbjct: 72 catggttttgtatcaatata 91
>27910_mml-mir-450a-2:mirbase
Length = 100
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | ||||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagttttgtatcaata 89
|| |||||||||||||||||
Sbjct: 74 attcatagttttgtatcaata 94
>28658_hsa-mir-450a-2:mirbase
Length = 100
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | ||||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagttttgtatcaata 89
|| |||||||||||||||||
Sbjct: 74 attcatagttttgtatcaata 94
>30380_ptr-mir-450a-2:mirbase
Length = 99
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | ||||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagttttgtatcaata 89
|| |||||||||||||||||
Sbjct: 74 attcatagttttgtatcaata 94
>33381_bta-mir-450:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | | ||||| |||||||||||||||||
Sbjct: 13 ctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgc 72
Query: 69 atgtatagttttgtatcaat 88
|| ||||||||||||||||
Sbjct: 73 attcatagttttgtatcaat 92
>27186_eca-mir-451a:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatg 71
|||| |||||||||||||||||||||| | | ||||||| |||||||||||||||||||
Sbjct: 12 aactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcatt 71
Query: 72 tatagttttgtatcaata 89
|||||||||||||||||
Sbjct: 72 catagttttgtatcaata 89
>32080_mmu-mir-450a-1:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 5 gatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacatt 64
|||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
Query: 65 ttgcatgtatagttttgtatcaata 89
|||||| |||| ||||| ||||||
Sbjct: 65 ttgcataaatagctttgtgtcaata 89
>31011_ppy-mir-450a-2:mirbase
Length = 100
Score = 95.6 bits (48), Expect = 5e-21
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||| | | ||||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatacgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagttttgtatcaat 88
|| ||||||||||||||||
Sbjct: 74 attcatagttttgtatcaat 93
>32918_rno-mir-450a:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatgta 73
|||||||||||||||||||||||| || ||| || ||||||||||||||||||||| |
Sbjct: 14 ctgtttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcataaa 73
Query: 74 tagtttt 80
|||||||
Sbjct: 74 tagtttt 80
>34100_ssc-mir-450c:mirbase
Length = 81
Score = 69.9 bits (35), Expect = 3e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 8 actaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttg 67
|||||||| |||||||||||||||||||||| | | | ||| | ||||||||||||||||
Sbjct: 4 actaaactatttttgcgatgtgttcctaatacgtaatctaagtgtattgggaacattttg 63
Query: 68 cat 70
|||
Sbjct: 64 cat 66
>34101_ssc-mir-450c:mirbase
Length = 81
Score = 69.9 bits (35), Expect = 3e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 8 actaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttg 67
|||||||| |||||||||||||||||||||| | | | ||| | ||||||||||||||||
Sbjct: 4 actaaactatttttgcgatgtgttcctaatacgtaatctaagtgtattgggaacattttg 63
Query: 68 cat 70
|||
Sbjct: 64 cat 66
>34098_ssc-mir-450b:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| ||||||||||||||||||||| |||
Sbjct: 8 tttttgcaatatgttcctgaatatgtaatataagtatattgggaacattttgcatccata 67
Query: 76 gttttgtatc 85
||||||||||
Sbjct: 68 gttttgtatc 77
>34099_ssc-mir-450b:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| ||||||||||||||||||||| |||
Sbjct: 8 tttttgcaatatgttcctgaatatgtaatataagtatattgggaacattttgcatccata 67
Query: 76 gttttgtatc 85
||||||||||
Sbjct: 68 gttttgtatc 77
>32081_mmu-mir-450a-2:mirbase
Length = 69
Score = 61.9 bits (31), Expect = 7e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattggg 58
|||| |||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 2 aactatttttgcgatgtgttcctaatatgtactatgagtatattggg 48
>27183_eca-mir-450b:mirbase
Length = 79
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | ||||||||||||||||||| |||
Sbjct: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatccata 70
Query: 76 gttttgtat 84
|||||||||
Sbjct: 71 gttttgtat 79
>27184_eca-mir-450b:mirbase
Length = 79
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | ||||||||||||||||||| |||
Sbjct: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatccata 70
Query: 76 gttttgtat 84
|||||||||
Sbjct: 71 gttttgtat 79
>32082_mmu-mir-450b:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagttttgtatc 85
|||||||||||||||||||| ||| |||||||||
Sbjct: 49 tattgggaacattttgcatgcataattttgtatc 82
>32083_mmu-mir-450b:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagttttgtatc 85
|||||||||||||||||||| ||| |||||||||
Sbjct: 49 tattgggaacattttgcatgcataattttgtatc 82
>28659_hsa-mir-450b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | |||||||| |||||||||| |||
Sbjct: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
Query: 76 gttttgtat 84
|||||||||
Sbjct: 70 gttttgtat 78
>28660_hsa-mir-450b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | |||||||| |||||||||| |||
Sbjct: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
Query: 76 gttttgtat 84
|||||||||
Sbjct: 70 gttttgtat 78
>31012_ppy-mir-450b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | |||||||| |||||||||| |||
Sbjct: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
Query: 76 gttttgtat 84
|||||||||
Sbjct: 70 gttttgtat 78
>31013_ppy-mir-450b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | |||||||| |||||||||| |||
Sbjct: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
Query: 76 gttttgtat 84
|||||||||
Sbjct: 70 gttttgtat 78
>30381_ptr-mir-450b:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | ||||| | |||||||| |||||||||| |||
Sbjct: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
Query: 76 gttttgta 83
||||||||
Sbjct: 70 gttttgta 77
>26849_cfa-mir-450b:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 18 ttttgcgatgtgttcct-aatatgcactataaatatattgggaacattttgcat 70
|||||| || ||||||| |||||| | ||||| | |||||||||||||||||||
Sbjct: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
>27911_mml-mir-450b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagttttgtat 84
|||||||| |||||||||| ||||||||||||
Sbjct: 46 tattgggatcattttgcatccatagttttgtat 78
>27912_mml-mir-450b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagttttgtat 84
|||||||| |||||||||| ||||||||||||
Sbjct: 46 tattgggatcattttgcatccatagttttgtat 78
