miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>27922_mml-mir-486:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 9

                  
Query: 61 caggatac 68
          ||||||||
Sbjct: 8  caggatac 1



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 3  atcctgtactgagctgccccgag 25



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 44 ctcggggcagctcagtacaggat 66




>27923_mml-mir-486:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 9

                  
Query: 61 caggatac 68
          ||||||||
Sbjct: 8  caggatac 1



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 3  atcctgtactgagctgccccgag 25



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 44 ctcggggcagctcagtacaggat 66




>28674_hsa-mir-486:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60

                  
Query: 61 caggatac 68
          ||||||||
Sbjct: 61 caggatac 68



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44




>31022_ppy-mir-486:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60

                  
Query: 61 caggatac 68
          ||||||||
Sbjct: 61 caggatac 68



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44




>30389_ptr-mir-486:mirbase
          Length = 67

 Score =  133 bits (67), Expect = 2e-32
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60

                 
Query: 61 caggata 67
          |||||||
Sbjct: 61 caggata 67



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44




>27190_eca-mir-486:mirbase
          Length = 66

 Score =  103 bits (52), Expect = 1e-23
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 3  atcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtaca 62
          |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 3  atcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtaca 62

              
Query: 63 ggat 66
          ||||
Sbjct: 63 ggat 66



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44




>27191_eca-mir-486:mirbase
          Length = 66

 Score =  103 bits (52), Expect = 1e-23
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 3  atcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtaca 62
          |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 3  atcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtaca 62

              
Query: 63 ggat 66
          ||||
Sbjct: 63 ggat 66



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 44 ctcggggcagctcagtacaggat 66
          |||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 3  atcctgtactgagctgccccgag 25
          |||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44




>32175_mmu-mir-486:mirbase
          Length = 128

 Score = 85.7 bits (43), Expect = 3e-18
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                      
Query: 4  tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
          ||||||||||||||||||||||| ||||||   ||| |||||||||||||||||||||||
Sbjct: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92

             
Query: 64 gat 66
          |||
Sbjct: 93 gat 95



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                   
Query: 1  gcatcctgtactgagctgccccgag 25
          |||||||||||||||||||||||||
Sbjct: 97 gcatcctgtactgagctgccccgag 73



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 44 ctcggggcagctcagtacagga 65
          ||||||||||||||||||||||
Sbjct: 54 ctcggggcagctcagtacagga 33




>32567_mmu-mir-3107:mirbase
          Length = 90

 Score = 85.7 bits (43), Expect = 3e-18
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                      
Query: 4  tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
          ||||||||||||||||||||||| ||||||   ||| |||||||||||||||||||||||
Sbjct: 76 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 17

             
Query: 64 gat 66
          |||
Sbjct: 16 gat 14



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  gcatcctgtactgagctgccccgag 25
          |||||||||||||||||||||||||
Sbjct: 12 gcatcctgtactgagctgccccgag 36



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 44 ctcggggcagctcagtacagga 65
          ||||||||||||||||||||||
Sbjct: 55 ctcggggcagctcagtacagga 76




>33391_bta-mir-486:mirbase
          Length = 124

 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                    
Query: 4  tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
          |||||||||||||||||||||||||||||    ||||||||||||| |||||||||||
Sbjct: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 44 ctcggggcagctcagtacagga 65
          ||||||||||||||||||||||
Sbjct: 53 ctcggggcagctcagtacagga 32




>34106_ssc-mir-486-2:mirbase
          Length = 82

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                    
Query: 4  tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
          |||||||||||||||||||||||||| |||   ||||||||||||| |||||||||||
Sbjct: 11 tcctgtactgagctgccccgaggccc-tcactgtgcccagctcgggccagctcagtac 67



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 44 ctcggggcagctcagtacagga 65
          ||||||||||||||||||||||
Sbjct: 32 ctcggggcagctcagtacagga 11




>34105_ssc-mir-486-1:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 4  tcctgtactgagctgccccgaggccct 30
          |||||||||||||||||||||||||||
Sbjct: 46 tcctgtactgagctgccccgaggccct 72



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 44 ctcggggcagctcagtacagga 65
          ||||||||||||||||||||||
Sbjct: 67 ctcggggcagctcagtacagga 46