miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>27928_mml-mir-490:mirbase
          Length = 128

 Score =  254 bits (128), Expect = 1e-68
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60

                                                                       
Query: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120

                   
Query: 121 cacttcca 128
           ||||||||
Sbjct: 121 cacttcca 128




>27929_mml-mir-490:mirbase
          Length = 128

 Score =  254 bits (128), Expect = 1e-68
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60

                                                                       
Query: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120

                   
Query: 121 cacttcca 128
           ||||||||
Sbjct: 121 cacttcca 128




>28680_hsa-mir-490:mirbase
          Length = 128

 Score =  254 bits (128), Expect = 1e-68
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60

                                                                       
Query: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120

                   
Query: 121 cacttcca 128
           ||||||||
Sbjct: 121 cacttcca 128




>30394_ptr-mir-490:mirbase
          Length = 127

 Score =  252 bits (127), Expect = 5e-68
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaa 60

                                                                       
Query: 62  gtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggac 120

                  
Query: 122 acttcca 128
           |||||||
Sbjct: 121 acttcca 127




>31027_ppy-mir-490:mirbase
          Length = 128

 Score =  246 bits (124), Expect = 3e-66
 Identities = 127/128 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60

                                                                       
Query: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacgagcagcgga 120

                   
Query: 121 cacttcca 128
           ||||||||
Sbjct: 121 cacttcca 128




>31028_ppy-mir-490:mirbase
          Length = 128

 Score =  246 bits (124), Expect = 3e-66
 Identities = 127/128 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60

                                                                       
Query: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61  agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacgagcagcgga 120

                   
Query: 121 cacttcca 128
           ||||||||
Sbjct: 121 cacttcca 128




>33396_bta-mir-490:mirbase
          Length = 127

 Score =  220 bits (111), Expect = 2e-58
 Identities = 117/119 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7   cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66

                                                                      
Query: 68  agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 126
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125




>26860_cfa-mir-490:mirbase
          Length = 81

 Score =  145 bits (73), Expect = 9e-36
 Identities = 79/81 (97%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacc 80
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1   aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacaccaacc 60

                                
Query: 81  tggaggactccatgctgttga 101
           |||||||||||||||||||||
Sbjct: 61  tggaggactccatgctgttga 81




>32179_mmu-mir-490:mirbase
          Length = 84

 Score =  143 bits (72), Expect = 4e-35
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                       
Query: 18  tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 1   tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60

                                   
Query: 78  acctggaggactccatgctgttga 101
           ||||||||||||||||||||||||
Sbjct: 61  acctggaggactccatgctgttga 84




>32180_mmu-mir-490:mirbase
          Length = 84

 Score =  143 bits (72), Expect = 4e-35
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                       
Query: 18  tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 1   tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60

                                   
Query: 78  acctggaggactccatgctgttga 101
           ||||||||||||||||||||||||
Sbjct: 61  acctggaggactccatgctgttga 84




>32934_rno-mir-490:mirbase
          Length = 84

 Score =  143 bits (72), Expect = 4e-35
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                       
Query: 18  tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 1   tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60

                                   
Query: 78  acctggaggactccatgctgttga 101
           ||||||||||||||||||||||||
Sbjct: 61  acctggaggactccatgctgttga 84




>26041_gga-mir-490:mirbase
          Length = 93

 Score =  139 bits (70), Expect = 6e-34
 Identities = 88/93 (94%), Gaps = 2/93 (2%)
 Strand = Plus / Plus

                                                                       
Query: 22  aagttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaac 79
           |||||||| |||||||||||||||||||||||||||||||| |||  ||||| |||||||
Sbjct: 1   aagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaac 60

                                            
Query: 80  ctggaggactccatgctgttgagctgttcacaa 112
           |||||||||||||||||||||||||||||||||
Sbjct: 61  ctggaggactccatgctgttgagctgttcacaa 93




>31560_oan-mir-490:mirbase
          Length = 124

 Score =  133 bits (67), Expect = 3e-32
 Identities = 91/99 (91%)
 Strand = Plus / Plus

                                                                       
Query: 17  ttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacc 76
           ||||||||||||  ||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct: 8   ttggaaagttcacggttcgacgccatggatctccaggtgggtcaaggttagagacgcacc 67

                                                  
Query: 77  aacctggaggactccatgctgttgagctgttcacaagca 115
           |||||||||||||||||||||| |||||| |||| ||||
Sbjct: 68  aacctggaggactccatgctgtcgagctgatcacgagca 106




>27196_eca-mir-490:mirbase
          Length = 69

 Score =  121 bits (61), Expect = 1e-28
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                       
Query: 33  tcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctggaggactcca 92
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1   tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60

                    
Query: 93  tgctgttga 101
           |||||||||
Sbjct: 61  tgctgttga 69




>27197_eca-mir-490:mirbase
          Length = 69

 Score =  121 bits (61), Expect = 1e-28
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                       
Query: 33  tcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctggaggactcca 92
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1   tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60

                    
Query: 93  tgctgttga 101
           |||||||||
Sbjct: 61  tgctgttga 69




>34108_ssc-mir-490:mirbase
          Length = 79

 Score =  117 bits (59), Expect = 2e-27
 Identities = 74/79 (93%)
 Strand = Plus / Plus

                                                                       
Query: 29  ttgttcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctggaggac 88
           ||||||||||||||||||| |||||||||||| ||||  |||| ||||||||||||||||
Sbjct: 1   ttgttcgacaccatggatccccaggtgggtcacgtttcaagatacaccaacctggaggac 60

                              
Query: 89  tccatgctgttgagctgtt 107
           |||||||||||||||||||
Sbjct: 61  tccatgctgttgagctgtt 79




>26540_tgu-mir-490-1:mirbase
          Length = 93

 Score =  113 bits (57), Expect = 3e-26
 Identities = 81/88 (92%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 23  agttcattgttcgacaccatggatctccaggtgggtcaagtt--tagagatgcaccaacc 80
           |||||||  ||||||||||||||||||||||||||||||| |  ||||||| ||||||||
Sbjct: 6   agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65

                                       
Query: 81  tggaggactccatgctgttgagctgttc 108
           |||||||||||||||||| |||||||||
Sbjct: 66  tggaggactccatgctgtcgagctgttc 93




>26541_tgu-mir-490-2:mirbase
          Length = 93

 Score =  113 bits (57), Expect = 3e-26
 Identities = 81/88 (92%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 23  agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
           |||||||  ||||||||||||||||||||||||||||||| |||  ||||| ||||||||
Sbjct: 6   agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65

                                       
Query: 81  tggaggactccatgctgttgagctgttc 108
           |||||||||||||||||| |||||||||
Sbjct: 66  tggaggactccatgctgtcgagctgttc 93