miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30396_ptr-mir-492:mirbase
Length = 115
Score = 212 bits (107), Expect = 4e-56
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 2 aactacagccactactacaggaccatcgaggacctgcgggacaagattcttggtgccacc 61
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 1 aactacagccactactacaggaccatcaaggacctgcgggacaagattctgggtgccacc 60
Query: 62 attgagaacgccaggattgtcctgcagatcaacaatgctcaactggctgcagatg 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgagaacgccaggattgtcctgcagatcaacaatgctcaactggctgcagatg 115
>27932_mml-mir-492:mirbase
Length = 114
Score = 147 bits (74), Expect = 2e-36
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 3 actacagccactactacaggaccatcgaggacctgcgggacaagattcttggtgccacca 62
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct: 1 actacagccactactacaagaccttcgaggacctgcgggacaagattcttggtgccgtca 60
Query: 63 ttgagaacgccaggattgtcctgcagatcaacaatgctcaactggctgcagatg 116
||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 atgagaactccaggattgtcctgcagatcaacaatgcctgtctggctgcagatg 114
>31031_ppy-mir-492:mirbase
Length = 121
Score = 147 bits (74), Expect = 2e-36
Identities = 93/98 (94%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 20 aggaccatcgaggacctgcgggacaagattcttggtgccaccattgagaacgccaggatt 79
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24 aggaccattgaggacctgcgggacaagattcttggtgccaccattgagaactccaggatt 83
Query: 80 gtcctgcagatcaacaa-tgctcaactggctgcagatg 116
|||||||| |||||||| |||||| |||||||||||||
Sbjct: 84 gtcctgcacatcaacaattgctcatctggctgcagatg 121
>27200_eca-mir-492-1:mirbase
Length = 66
Score = 85.7 bits (43), Expect = 7e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 29 gaggacctgcgggacaagattcttggtgccaccattgagaacgccaggattgtcctgcag 88
||||| |||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||
Sbjct: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
Query: 89 atc 91
|||
Sbjct: 61 atc 63
>27201_eca-mir-492-2:mirbase
Length = 62
Score = 83.8 bits (42), Expect = 3e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 30 aggacctgcgggacaagattcttggtgccaccattgagaacgccaggattgtcctgcaga 89
|||| |||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||
Sbjct: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
Query: 90 tc 91
||
Sbjct: 61 tc 62
