miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30399_ptr-mir-496:mirbase
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 2 ccaagtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaagtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagta 60
Query: 62 ttacatggccaatctcctttcggtactcaattcttcttggg 102
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttacatggccaatctcctttcggtactcaattcttcttggg 101
>27936_mml-mir-496:mirbase
Length = 102
Score = 194 bits (98), Expect = 9e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
Query: 65 catggccaatctcctttcggtactcaattcttcttggg 102
||||||||||||||||||||||||||||||||||||||
Sbjct: 65 catggccaatctcctttcggtactcaattcttcttggg 102
>31035_ppy-mir-496:mirbase
Length = 102
Score = 194 bits (98), Expect = 9e-51
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 1 cccaagtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccaagtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagt 60
Query: 61 attacatggccaatctcctttcggtactcaattcttcttggg 102
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 attacatggccaatctccttttggtactcaattcttcttggg 102
>27206_eca-mir-496:mirbase
Length = 103
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 8 caggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacat 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 caggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacat 68
Query: 68 ggccaatctcctttcggtactcaattcttcttggg 102
||||||||||||||| ||||| |||||||||||||
Sbjct: 69 ggccaatctcctttcagtactaaattcttcttggg 103
>26865_cfa-mir-496:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcaggtacttgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 60
Query: 65 catggccaatctcctttcggtactcaattcttcttggg 102
|||||||||||||||||| ||||| |||||||||||||
Sbjct: 61 catggccaatctcctttcagtactaaattcttcttggg 98
>33862_oar-mir-496:mirbase
Length = 119
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 agtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 83
Query: 65 catggccaatctcctttcggtactcaattcttcttg 100
|||||||||||||||||| ||||| |||||||||||
Sbjct: 84 catggccaatctcctttcagtactaaattcttcttg 119
>33863_oar-mir-496:mirbase
Length = 119
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 agtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 83
Query: 65 catggccaatctcctttcggtactcaattcttcttg 100
|||||||||||||||||| ||||| |||||||||||
Sbjct: 84 catggccaatctcctttcagtactaaattcttcttg 119
>33401_bta-mir-496:mirbase
Length = 102
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 10 ggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatgg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatgg 69
Query: 70 ccaatctcctttcggtactcaattcttcttggg 102
||||||||||||| ||||| |||||||| ||||
Sbjct: 70 ccaatctcctttcagtactaaattcttcatggg 102
>32938_rno-mir-496:mirbase
Length = 79
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 15 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 65
Query: 75 ctcctttcgg 84
||||||||||
Sbjct: 66 ctcctttcgg 75
>32185_mmu-mir-496:mirbase
Length = 79
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 15 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 74
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcgaatggaggttgcccatggtgtgttcattttatttatgatgagtattacatggccaat 65
Query: 75 ctcctttcgg 84
||||||||||
Sbjct: 66 ctcctttcgg 75
