miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28690_hsa-mir-499:mirbase
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcct 60
Query: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 120
Query: 121 gt 122
||
Sbjct: 121 gt 122
>30402_ptr-mir-499:mirbase
Length = 121
Score = 232 bits (117), Expect = 5e-62
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 2 ccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcctc 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ccctgtcccctgtgccttgggcgggcagctgttaagacttgcagtgatgtttaactcctc 60
Query: 62 tccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcaggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcaggg 120
Query: 122 t 122
|
Sbjct: 121 t 121
>31038_ppy-mir-499:mirbase
Length = 122
Score = 226 bits (114), Expect = 3e-60
Identities = 120/122 (98%)
Strand = Plus / Plus
Query: 1 gccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcct 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gccctgtcccctgtgccttgggcgggcggccgttaagacttgcagtgatgtttaactcct 60
Query: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcttgggcagg 120
Query: 121 gt 122
||
Sbjct: 121 gt 122
>31039_ppy-mir-499:mirbase
Length = 122
Score = 226 bits (114), Expect = 3e-60
Identities = 120/122 (98%)
Strand = Plus / Plus
Query: 1 gccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcct 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gccctgtcccctgtgccttgggcgggcggccgttaagacttgcagtgatgtttaactcct 60
Query: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcttgggcagg 120
Query: 121 gt 122
||
Sbjct: 121 gt 122
>27939_mml-mir-499:mirbase
Length = 121
Score = 210 bits (106), Expect = 2e-55
Identities = 119/122 (97%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 1 gccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcct 60
||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 gccctgtcccc-gtgtcttgggcgggcagctgttaagacttgcagtgatgtttaactcct 59
Query: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 119
Query: 121 gt 122
||
Sbjct: 120 gt 121
>27940_mml-mir-499:mirbase
Length = 121
Score = 210 bits (106), Expect = 2e-55
Identities = 119/122 (97%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 1 gccctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcct 60
||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 gccctgtcccc-gtgtcttgggcgggcagctgttaagacttgcagtgatgtttaactcct 59
Query: 61 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ctccacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagg 119
Query: 121 gt 122
||
Sbjct: 120 gt 121
>27208_eca-mir-499:mirbase
Length = 123
Score = 196 bits (99), Expect = 3e-51
Identities = 114/119 (95%)
Strand = Plus / Plus
Query: 4 ctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcctctc 63
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctgtcccctgcaccctgggcgggcggctgttaagacttgcagtgatgtttaactcctctc 64
Query: 64 cacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagggt 122
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 65 cacgtgaacatcacagcaagtctgtgctgcttcccgtccccatgctgcctgggcagggt 123
>27209_eca-mir-499:mirbase
Length = 123
Score = 196 bits (99), Expect = 3e-51
Identities = 114/119 (95%)
Strand = Plus / Plus
Query: 4 ctgtcccctgtgccttgggcgggcggctgttaagacttgcagtgatgtttaactcctctc 63
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctgtcccctgcaccctgggcgggcggctgttaagacttgcagtgatgtttaactcctctc 64
Query: 64 cacgtgaacatcacagcaagtctgtgctgcttcccgtccctacgctgcctgggcagggt 122
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 65 cacgtgaacatcacagcaagtctgtgctgcttcccgtccccatgctgcctgggcagggt 123
>33403_bta-mir-499:mirbase
Length = 103
Score = 188 bits (95), Expect = 6e-49
Identities = 101/103 (98%)
Strand = Plus / Plus
Query: 20 gggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 79
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcgggcggccgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 60
Query: 80 caagtctgtgctgcttcccgtccctacgctgcctgggcagggt 122
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 caagtctgtgctgcttcccgtccccacgctgcctgggcagggt 103
>34112_ssc-mir-499:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 19 tgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 78
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggcgggcggccgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 60
Query: 79 gcaagtctgtgctgcttccc 98
||||||||||||||||||||
Sbjct: 61 gcaagtctgtgctgcttccc 80
>34113_ssc-mir-499:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 19 tgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 78
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggcgggcggccgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 60
Query: 79 gcaagtctgtgctgcttccc 98
||||||||||||||||||||
Sbjct: 61 gcaagtctgtgctgcttccc 80
>28692_hsa-mir-499a:mirbase
Length = 73
Score = 145 bits (73), Expect = 9e-36
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 25 ggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagt 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagt 14
Query: 85 ctgtgctgcttcc 97
|||||||||||||
Sbjct: 13 ctgtgctgcttcc 1
>28693_hsa-mir-499a:mirbase
Length = 73
Score = 145 bits (73), Expect = 9e-36
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 25 ggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagt 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagt 14
Query: 85 ctgtgctgcttcc 97
|||||||||||||
Sbjct: 13 ctgtgctgcttcc 1
>26867_cfa-mir-499:mirbase
Length = 59
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 33 ttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgtgct 59
>32940_rno-mir-499:mirbase
Length = 65
Score = 113 bits (57), Expect = 3e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 29 gctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaagtctgt 88
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 gctgttaagacttgcagtgatgtttagctcctctccatgtgaacatcacagcaagtctgt 60
Query: 89 gctgc 93
|||||
Sbjct: 61 gctgc 65
>32187_mmu-mir-499:mirbase
Length = 79
Score = 109 bits (55), Expect = 5e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 24 gggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacagcaag 83
|||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 5 gggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcacagcaag 64
Query: 84 tctgtgctgct 94
|||||||||||
Sbjct: 65 tctgtgctgct 75
>31561_oan-mir-499:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 5e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 19 tgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 78
|||| |||| || ||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 5 tgggggggcagcggttaagacttgtagtgatgtttagctcatctccacgtgaacatcact 64
Query: 79 gcaagtctgtgctgcttc 96
||||||||||||||||||
Sbjct: 65 gcaagtctgtgctgcttc 82
>27456_mdo-mir-499:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 7e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 20 gggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 79
|||||||| ||||||||||||||||||||||||||| || |||| | ||||||||||||
Sbjct: 1 gggcgggcagctgttaagacttgcagtgatgtttaattcttctctatgtgaacatcacaa 60
Query: 80 caagtct 86
|||||||
Sbjct: 61 caagtct 67
>25865_xtr-mir-499:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>34488_dre-mir-499:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 16 gttaagacttgcagtgatgttta 38
>26042_gga-mir-499:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 26 gcggctgttaagacttgcagtgatgttta 54
||||| ||||||||||| |||||||||||
Sbjct: 10 gcggcagttaagacttgtagtgatgttta 38
