miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31040_ppy-mir-500:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattctgagagcgagagc 84
||||||||||||||||||||||||
Sbjct: 61 ggcaaggattctgagagcgagagc 84
>27941_mml-mir-500:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctatctgaatgcaatgcacctg 60
Query: 61 ggcaaggattctgagagcgagagc 84
||||||||||||||||||||||||
Sbjct: 61 ggcaaggattctgagagcgagagc 84
>30403_ptr-mir-500:mirbase
Length = 83
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 ctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgg 60
Query: 62 gcaaggattctgagagcgagagc 84
|||||||||||||| ||||||||
Sbjct: 61 gcaaggattctgagcgcgagagc 83
>27210_eca-mir-500:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattctgagagcgagagc 84
||||||||||| ||||||||||||
Sbjct: 61 ggcaaggattccgagagcgagagc 84
>33404_bta-mir-500:mirbase
Length = 84
Score = 145 bits (73), Expect = 6e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 61 ggcaaggattctgagag 77
|||||||||||||||||
Sbjct: 61 ggcaaggattctgagag 77
>34114_ssc-mir-500:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggca 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cccctctctaatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggca 60
Query: 65 aggattctgagagcgagagc 84
||||||||||||| ||||||
Sbjct: 61 aggattctgagagtgagagc 80
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 61 ggcaaggattctgagagcgagag 83
||||||||||| ||||| |||||
Sbjct: 61 ggcaaggattccgagagggagag 83
>27213_eca-mir-502:mirbase
Length = 80
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>27214_eca-mir-502:mirbase
Length = 80
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>31042_ppy-mir-502:mirbase
Length = 86
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>31043_ppy-mir-502:mirbase
Length = 86
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>26868_cfa-mir-500:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 14 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattct 72
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 3 tccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctggg 62
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct: 1 tccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccagg 60
Query: 63 caaggattctg 73
|||||||||||
Sbjct: 61 caaggattctg 71
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 4 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 63
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
Query: 64 aaggattctg 73
||||||||||
Sbjct: 61 aaggattctg 70
>28698_hsa-mir-502:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>28699_hsa-mir-502:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>30406_ptr-mir-502:mirbase
Length = 85
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 60
Query: 61 ggcaaggattctgagag 77
||||||||||| |||||
Sbjct: 61 ggcaaggattcagagag 77
>27943_mml-mir-502:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 6 ccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaa 65
||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 66 ggattctgagag 77
|||||| |||||
Sbjct: 61 ggattcagagag 72
>27944_mml-mir-502:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 6 ccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaa 65
||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 66 ggattctgagag 77
|||||| |||||
Sbjct: 61 ggattcagagag 72
>28696_hsa-mir-501:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>28697_hsa-mir-501:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>30405_ptr-mir-501:mirbase
Length = 83
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 6 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 65
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 66 gattctgagag 76
>31041_ppy-mir-501:mirbase
Length = 78
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 60
Query: 67 gattctgagag 77
||||| |||||
Sbjct: 61 gattcagagag 71
>27212_eca-mir-501:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>27942_mml-mir-501:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||||| |||||||||| |||||| ||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcagtgcacccaggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>26869_cfa-mir-502:mirbase
Length = 59
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 14 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattc 71
||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
>33407_bta-mir-502b:mirbase
Length = 83
Score = 83.8 bits (42), Expect = 2e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggca 64
|||||||||||| |||||| || |||||||||||| | |||||||||| ||||||||||
Sbjct: 4 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 63
Query: 65 aggattctga 74
||||||||||
Sbjct: 64 aggattctga 73
>32188_mmu-mir-500:mirbase
Length = 92
Score = 81.8 bits (41), Expect = 7e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtg-agagtgctgtctgaatgcaatgcacct 59
|||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
Query: 60 gggcaaggattctgaga 76
|||||||| ||| ||||
Sbjct: 68 gggcaagggttcagaga 84
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 10 ctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggat 69
|||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 69
Query: 70 tctgagag 77
|| |||||
Sbjct: 70 tcagagag 77
>32941_rno-mir-500:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 4e-15
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 ccccctctctaatccttgctacctgggtgag-agtgctgtctgaatgcaatgcacctggg 62
||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||
Sbjct: 1 ccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctggg 60
Query: 63 caaggattctgaga 76
||||| ||| ||||
Sbjct: 61 caagggttcagaga 74
>32189_mmu-mir-501:mirbase
Length = 109
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | |||| | || |||||||||||| |||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 67 gatt 70
||||
Sbjct: 77 gatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | |||| | || |||||||||||| |||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 67 gatt 70
||||
Sbjct: 77 gatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | |||| | || |||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 66
Query: 67 gatt 70
||||
Sbjct: 67 gatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | |||| | || |||||||||||| |||||||
Sbjct: 95 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 36
Query: 67 gatt 70
||||
Sbjct: 35 gatt 32
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 39 ctgtctgaatgcaatgcacctgggcaaggattc 71
|||||| | ||||||||||||||||||||||||
Sbjct: 46 ctgtctcagtgcaatgcacctgggcaaggattc 78
