miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 61
Query: 61 aaggattctgcaaggggg 78
||||||||||||||||||
Sbjct: 62 aaggattctgcaaggggg 79
>33404_bta-mir-500:mirbase
Length = 84
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggc 63
Query: 61 aaggattctg 70
||||||||||
Sbjct: 64 aaggattctg 73
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 111 bits (56), Expect = 7e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggc 63
Query: 61 aaggattc 68
||||||||
Sbjct: 64 aaggattc 71
>27942_mml-mir-501:mirbase
Length = 84
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcagtgcacccaggcaag 66
Query: 64 gattctg 70
|||||||
Sbjct: 67 gattctg 73
>27941_mml-mir-500:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctacctgggtgagagtgctatctgaatgcaatgcacctgggc 63
Query: 61 aaggattctg 70
||||||||||
Sbjct: 64 aaggattctg 73
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 63
Query: 61 aaggattctg 70
||||||||||
Sbjct: 64 aaggattctg 73
>30403_ptr-mir-500:mirbase
Length = 83
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 3 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 62
Query: 61 aaggattctg 70
||||||||||
Sbjct: 63 aaggattctg 72
>31040_ppy-mir-500:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 63
Query: 61 aaggattctg 70
||||||||||
Sbjct: 64 aaggattctg 73
>34114_ssc-mir-500:mirbase
Length = 80
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 2 cccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggca 61
|||||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||
Sbjct: 1 cccctctctaatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggca 60
Query: 62 aggattctg 70
|||||||||
Sbjct: 61 aggattctg 69
>27210_eca-mir-500:mirbase
Length = 84
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggc 63
Query: 61 aaggattc 68
||||||||
Sbjct: 64 aaggattc 71
>26868_cfa-mir-500:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 11 aatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattct 69
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
>28696_hsa-mir-501:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 64 gattctg 70
|||||||
Sbjct: 67 gattctg 73
>28697_hsa-mir-501:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 64 gattctg 70
|||||||
Sbjct: 67 gattctg 73
>30405_ptr-mir-501:mirbase
Length = 83
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 6 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 65
Query: 64 gattctg 70
|||||||
Sbjct: 66 gattctg 72
>27213_eca-mir-502:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| |||
Sbjct: 5 ccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggc 64
Query: 61 aaggattc 68
||||||||
Sbjct: 65 aaggattc 72
>27214_eca-mir-502:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| |||
Sbjct: 5 ccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggc 64
Query: 61 aaggattc 68
||||||||
Sbjct: 65 aaggattc 72
>31042_ppy-mir-502:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 6e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| |||
Sbjct: 5 ccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggc 64
Query: 61 aaggattc 68
||||||||
Sbjct: 65 aaggattc 72
>31043_ppy-mir-502:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 6e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| |||
Sbjct: 5 ccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggc 64
Query: 61 aaggattc 68
||||||||
Sbjct: 65 aaggattc 72
>27212_eca-mir-501:mirbase
Length = 84
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 3 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaa 62
|||||||| |||||| | ||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 6 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 65
Query: 63 ggattc 68
||||||
Sbjct: 66 ggattc 71
>27943_mml-mir-502:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 3 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaa 62
||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| |||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 63 ggattc 68
||||||
Sbjct: 61 ggattc 66
>27944_mml-mir-502:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 3 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaa 62
||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| |||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 63 ggattc 68
||||||
Sbjct: 61 ggattc 66
>31041_ppy-mir-501:mirbase
Length = 78
Score = 65.9 bits (33), Expect = 4e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||||||| ||||||| |||||| ||| |||||| |||||| ||||||
Sbjct: 1 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 60
Query: 64 gattc 68
|||||
Sbjct: 61 gattc 65
>33407_bta-mir-502b:mirbase
Length = 83
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 cccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggca 61
|||||||||||| |||||| || |||||||||||||| |||||||| | |||| ||||
Sbjct: 4 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 63
Query: 62 aggattctg 70
|||||||||
Sbjct: 64 aggattctg 72
>28698_hsa-mir-502:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| || |||||| |||||| |||
Sbjct: 5 ccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggc 64
Query: 61 aaggattc 68
||||||||
Sbjct: 65 aaggattc 72
>28699_hsa-mir-502:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| || |||||| |||||| |||
Sbjct: 5 ccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggc 64
Query: 61 aaggattc 68
||||||||
Sbjct: 65 aaggattc 72
>30406_ptr-mir-502:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| ||||||| |||||| || |||||| |||||| |||
Sbjct: 4 ccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggc 63
Query: 61 aaggattc 68
||||||||
Sbjct: 64 aaggattc 71
>26869_cfa-mir-502:mirbase
Length = 59
Score = 52.0 bits (26), Expect = 6e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 11 aatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattc 68
||||||||||| ||||||| |||||| ||| |||||| |||||| |||||||||||
Sbjct: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
>32188_mmu-mir-500:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtg 29
||||||||||||||||||||| |||||||
Sbjct: 11 ccccctctctaatccttgctatctgggtg 39
>32941_rno-mir-500:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtg 29
||||||||||||||||||||| |||||||
Sbjct: 1 ccccctctctaatccttgctatctgggtg 29
>32189_mmu-mir-501:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 9e-07
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||| | |||| | || ||||| ||||||| ||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 64 gatt 67
||||
Sbjct: 77 gatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 9e-07
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||| | |||| | || ||||| ||||||| ||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 64 gatt 67
||||
Sbjct: 77 gatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||| | |||| | || ||||| ||||||| ||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 66
Query: 64 gatt 67
||||
Sbjct: 67 gatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 9e-07
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||| | |||| | || ||||| ||||||| ||||||
Sbjct: 95 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 36
Query: 64 gatt 67
||||
Sbjct: 35 gatt 32
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 7 ctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggat 66
|||||||||||||| ||||||| |||||| ||| ||||| |||||| |||||||||
Sbjct: 10 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 69
Query: 67 tc 68
||
Sbjct: 70 tc 71
