miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28697_hsa-mir-501:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
Query: 61 ggcaaggattctgagagggtgagc 84
||||||||||||||||||||||||
Sbjct: 61 ggcaaggattctgagagggtgagc 84
>30405_ptr-mir-501:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 2 ctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgg 60
Query: 62 gcaaggattctgagagggtgagc 84
|||||||||||||||||||||||
Sbjct: 61 gcaaggattctgagagggtgagc 83
>27942_mml-mir-501:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcagtgcaccca 60
Query: 61 ggcaaggattctgagagggtgagc 84
||||||||||||||||||||||||
Sbjct: 61 ggcaaggattctgagagggtgagc 84
>33404_bta-mir-500:mirbase
Length = 84
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 105 bits (53), Expect = 5e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 66
Query: 67 gattctgagaggg 79
||||| |||||||
Sbjct: 67 gattccgagaggg 79
>27212_eca-mir-501:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>27941_mml-mir-500:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctacctgggtgagagtgctatctgaatgcaatgcacctgggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>31040_ppy-mir-500:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 66
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 67 gattctgagag 77
>30403_ptr-mir-500:mirbase
Length = 83
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 6 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 65
Query: 67 gattctgag 75
|||||||||
Sbjct: 66 gattctgag 74
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
Query: 67 gattctg 73
|||||||
Sbjct: 64 gattctg 70
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 5 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 64
Query: 67 gattctg 73
|||||||
Sbjct: 65 gattctg 71
>34114_ssc-mir-500:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 3 cctctctaatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggcaag 62
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 63 gattctgagag 73
>32189_mmu-mir-501:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||| |||||||||||||||||||||||||||| | |||| | || ||||||||||||||
Sbjct: 11 gctcatcctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccg 70
Query: 61 ggcaaggatt 70
||||||||||
Sbjct: 71 ggcaaggatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||| |||||||||||||||||||||||||||| | |||| | || ||||||||||||||
Sbjct: 11 gctcatcctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccg 70
Query: 61 ggcaaggatt 70
||||||||||
Sbjct: 71 ggcaaggatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||| |||||||||||||||||||||||||||| | |||| | || ||||||||||||||
Sbjct: 1 gctcgtcctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccg 60
Query: 61 ggcaaggatt 70
||||||||||
Sbjct: 61 ggcaaggatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||| |||||||||||||||||||||||||||| | |||| | || ||||||||||||||
Sbjct: 101 gctcgtcctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccg 42
Query: 61 ggcaaggatt 70
||||||||||
Sbjct: 41 ggcaaggatt 32
>26868_cfa-mir-500:mirbase
Length = 59
Score = 87.7 bits (44), Expect = 1e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 25 cctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattct 72
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
>27210_eca-mir-500:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
Query: 67 gattctgagag 77
||||| |||||
Sbjct: 67 gattccgagag 77
>33407_bta-mir-502b:mirbase
Length = 83
Score = 71.9 bits (36), Expect = 7e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||| ||| |||| |||||||||||||| |||||||||| |||| |||||||
Sbjct: 6 cctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggcaag 65
Query: 67 gattctga 74
||||||||
Sbjct: 66 gattctga 73
>27943_mml-mir-502:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 2 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 61
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 62 gattcagagagggggagc 79
>27944_mml-mir-502:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 2 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 61
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 62 gattcagagagggggagc 79
>31041_ppy-mir-501:mirbase
Length = 78
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 1 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 60
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 61 gattcagagagggggagc 78
>31042_ppy-mir-502:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 8 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 67
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 68 gattcagagagggggagc 85
>31043_ppy-mir-502:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 8 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 67
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 68 gattcagagagggggagc 85
>27213_eca-mir-502:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 4e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 8 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 67
Query: 67 gattctgagaggg 79
||||| |||||||
Sbjct: 68 gattcagagaggg 80
>27214_eca-mir-502:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 4e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 8 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 67
Query: 67 gattctgagaggg 79
||||| |||||||
Sbjct: 68 gattcagagaggg 80
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 10 ctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaaggat 69
||||||||||| || ||||||| |||||| ||| |||||||||||| ||||||||||
Sbjct: 10 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 69
Query: 70 tctgagagggtg 81
|| |||||||||
Sbjct: 70 tcagagagggtg 81
>28698_hsa-mir-502:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 68 gattcagagagggggagc 85
>28699_hsa-mir-502:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 68 gattcagagagggggagc 85
>30406_ptr-mir-502:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 7 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 66
Query: 67 gattctgagagggtgagc 84
||||| ||||||| ||||
Sbjct: 67 gattcagagagggggagc 84
>26869_cfa-mir-502:mirbase
Length = 59
Score = 52.0 bits (26), Expect = 6e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 26 ctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattc 71
||||||| |||||| ||| ||||||||||||| ||||||||||||
Sbjct: 13 ctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
>32188_mmu-mir-500:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 6e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 35 agtgctttctgaatgcaatgcacccgggcaaggattctgagagggtgagc 84
|||||| ||| ||||||||||||| |||||||| ||| |||| |||||||
Sbjct: 43 agtgctatctcaatgcaatgcacctgggcaagggttcagagaaggtgagc 92
>32941_rno-mir-500:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 agtgctttctgaatgcaatgcacccgggcaaggattctgagagggtga 82
|||||| ||| ||||||||||||| |||||||| ||| |||| |||||
Sbjct: 33 agtgctatctcaatgcaatgcacctgggcaagggttcagagaaggtga 80
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 tgcaatgcacccgggcaaggattc 71
||||||||||| ||||||||||||
Sbjct: 55 tgcaatgcacctgggcaaggattc 78
