miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28699_hsa-mir-502:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
Query: 61 gggcaaggattcagagagggggagct 86
||||||||||||||||||||||||||
Sbjct: 61 gggcaaggattcagagagggggagct 86
>30406_ptr-mir-502:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagagggggagct 86
|||||||||||||||||||||||||
Sbjct: 61 ggcaaggattcagagagggggagct 85
>31042_ppy-mir-502:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
Query: 61 gggcaaggattcagagagggggagct 86
||||||||||||||||||||||||||
Sbjct: 61 gggcaaggattcagagagggggagct 86
>31043_ppy-mir-502:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
Query: 61 gggcaaggattcagagagggggagct 86
||||||||||||||||||||||||||
Sbjct: 61 gggcaaggattcagagagggggagct 86
>27213_eca-mir-502:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
Query: 61 gggcaaggattcagagaggg 80
||||||||||||||||||||
Sbjct: 61 gggcaaggattcagagaggg 80
>27214_eca-mir-502:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
Query: 61 gggcaaggattcagagaggg 80
||||||||||||||||||||
Sbjct: 61 gggcaaggattcagagaggg 80
>27943_mml-mir-502:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 7 ccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaa 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 67 ggattcagagagggggagct 86
||||||||||||||||||||
Sbjct: 61 ggattcagagagggggagct 80
>27944_mml-mir-502:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 7 ccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaa 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 67 ggattcagagagggggagct 86
||||||||||||||||||||
Sbjct: 61 ggattcagagagggggagct 80
>31041_ppy-mir-501:mirbase
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 60
Query: 68 gattcagagagggggagc 85
||||||||||||||||||
Sbjct: 61 gattcagagagggggagc 78
>32188_mmu-mir-500:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgc-tagtgctggctcaatgcaatgcacc 59
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 7 tgctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacc 66
Query: 60 tgggcaaggattcagaga 77
||||||||| ||||||||
Sbjct: 67 tgggcaagggttcagaga 84
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 11 ctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggat 70
|||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 10 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 69
Query: 71 tcagagaggg 80
||||||||||
Sbjct: 70 tcagagaggg 79
>26869_cfa-mir-502:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 15 aatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggattca 73
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
>32941_rno-mir-500:mirbase
Length = 80
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 5 ccccctctctaatccttgctatctgggtgc-tagtgctggctcaatgcaatgcacctggg 63
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1 ccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctggg 60
Query: 64 caaggattcagaga 77
||||| ||||||||
Sbjct: 61 caagggttcagaga 74
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagag 78
||||||||||| |||||
Sbjct: 61 ggcaaggattctgagag 77
>31040_ppy-mir-500:mirbase
Length = 84
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagag 78
||||||||||| |||||
Sbjct: 61 ggcaaggattctgagag 77
>33404_bta-mir-500:mirbase
Length = 84
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagagggggagc 85
||||||||||| ||||| ||||||
Sbjct: 61 ggcaaggattctgagagagggagc 84
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagaggg 80
||||||||||| |||||||
Sbjct: 61 ggcaaggattccgagaggg 79
>30403_ptr-mir-500:mirbase
Length = 83
Score = 99.6 bits (50), Expect = 3e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 3 ctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgg 62
||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||
Sbjct: 1 ctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgg 60
Query: 63 gcaaggattc 72
||||||||||
Sbjct: 61 gcaaggattc 70
>27210_eca-mir-500:mirbase
Length = 84
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| |||| || || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagag 78
||||||||||| |||||
Sbjct: 61 ggcaaggattccgagag 77
>27941_mml-mir-500:mirbase
Length = 84
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctatctgaatgcaatgcacctg 60
Query: 62 ggcaaggattcagagag 78
||||||||||| |||||
Sbjct: 61 ggcaaggattctgagag 77
>34114_ssc-mir-500:mirbase
Length = 80
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 6 cccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggca 65
|||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||
Sbjct: 1 cccctctctaatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggca 60
Query: 66 aggattcagagag 78
||||||| |||||
Sbjct: 61 aggattctgagag 73
>26868_cfa-mir-500:mirbase
Length = 59
Score = 67.9 bits (34), Expect = 1e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 15 aatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggattc 72
||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 tccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctggg 63
|||||||||||||||||||||| ||||||| |||||| || |||||| |||||| ||
Sbjct: 1 tccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccagg 60
Query: 64 caaggattc 72
|||||||||
Sbjct: 61 caaggattc 69
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 5 ccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggc 64
||||||||||||||||||||| ||||||| |||||| || |||||| |||||| |||
Sbjct: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
Query: 65 aaggattc 72
||||||||
Sbjct: 61 aaggattc 68
>28696_hsa-mir-501:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 68 gattcagagagggggagc 85
||||| ||||||| ||||
Sbjct: 67 gattctgagagggtgagc 84
>28697_hsa-mir-501:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 68 gattcagagagggggagc 85
||||| ||||||| ||||
Sbjct: 67 gattctgagagggtgagc 84
>30405_ptr-mir-501:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 6 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 65
Query: 68 gattcagagagggggagc 85
||||| ||||||| ||||
Sbjct: 66 gattctgagagggtgagc 83
>27212_eca-mir-501:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 aatgcaatgcacctgggcaaggattc 72
||||||||||||||||||||||||||
Sbjct: 46 aatgcaatgcacctgggcaaggattc 71
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 44 ctcaatgcaatgcacctgggcaaggattca 73
|||| |||||||||||||||||||||||||
Sbjct: 50 ctcagtgcaatgcacctgggcaaggattca 79
>27942_mml-mir-501:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
|||||||||||||| | ||||||| |||||| || |||||| |||||| ||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcagtgcacccaggcaag 66
Query: 68 gattcagagagggggagc 85
||||| ||||||| ||||
Sbjct: 67 gattctgagagggtgagc 84
>33407_bta-mir-502b:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 aatgcaatgcacctgggcaaggattc 72
|||||||| |||||||||||||||||
Sbjct: 45 aatgcaatccacctgggcaaggattc 70
>32189_mmu-mir-501:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 atgcaatgcacctgggcaaggatt 71
|||||||||||| |||||||||||
Sbjct: 57 atgcaatgcacccgggcaaggatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 atgcaatgcacctgggcaaggatt 71
|||||||||||| |||||||||||
Sbjct: 57 atgcaatgcacccgggcaaggatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 atgcaatgcacctgggcaaggatt 71
|||||||||||| |||||||||||
Sbjct: 47 atgcaatgcacccgggcaaggatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 48 atgcaatgcacctgggcaaggatt 71
|||||||||||| |||||||||||
Sbjct: 55 atgcaatgcacccgggcaaggatt 32
