miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| ||||||||||||| ||| | |||| ||||||||||| | ||| || |||||
Sbjct: 77 gtgcaaaagtaattgtggtttttgcctgtaaaagtaatggcaaaaaccacagtttctttt 18
Query: 61 gcacca 66
||||||
Sbjct: 17 gcacca 12
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| ||||||||||||| ||| | |||| ||||||||||| | ||| || |||||
Sbjct: 21 gtgcaaaagtaattgtggtttttgcctgtaaaagtaatggcaaaaaccacagtttctttt 80
Query: 61 gcacca 66
||||||
Sbjct: 81 gcacca 86
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| ||||||||||||| ||| | |||| ||||||||||| | ||| || |||||
Sbjct: 21 gtgcaaaagtaattgtggtttttgcctgtaaaagtaatggcaaaaaccacagtttctttt 80
Query: 61 gcacca 66
||||||
Sbjct: 81 gcacca 86
>28807_hsa-mir-548ag-2:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 tgcaaaggtaattgtggtttctgc 25
||||||||||||||||||||||||
Sbjct: 1 tgcaaaggtaattgtggtttctgc 24
>27999_mml-mir-548d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| |||||||||||| ||| | |||| ||||||||||| | ||| || |||||
Sbjct: 21 gtgcaaaagtaattgtggttcttgcctataaaagtaatggcaaaaaccacaatttctttt 80
Query: 61 gcacca 66
||||||
Sbjct: 81 gcacca 86
>28000_mml-mir-548d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| |||||||||||| ||| | |||| ||||||||||| | ||| || |||||
Sbjct: 21 gtgcaaaagtaattgtggttcttgcctataaaagtaatggcaaaaaccacaatttctttt 80
Query: 61 gcacca 66
||||||
Sbjct: 81 gcacca 86
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| ||||||||||||| ||| || || ||||||||||| | ||| || |||||
Sbjct: 77 gtgcaaaagtaattgtggtttttgccattgaaagtaatggcaaaaaccacagtttctttt 18
Query: 61 gcacca 66
||||||
Sbjct: 17 gcacca 12
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| ||||||||||||| ||| || || ||||||||||| | ||| || |||||
Sbjct: 21 gtgcaaaagtaattgtggtttttgccattgaaagtaatggcaaaaaccacagtttctttt 80
Query: 61 gcacca 66
||||||
Sbjct: 81 gcacca 86
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctgcttttaaaggtaatggcaaatattacatttactttt 60
||||||| ||||||||||||| ||| || || ||||||||||| | ||| || |||||
Sbjct: 21 gtgcaaaagtaattgtggtttttgccattgaaagtaatggcaaaaaccacagtttctttt 80
Query: 61 gcacca 66
||||||
Sbjct: 81 gcacca 86
>28805_hsa-mir-548ae-2:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 gtgcaaaggtaattgtggtttctg-cttttaaaggtaatggcaaa 44
||||||| ||||||||||||| || | |||||| |||||||||||
Sbjct: 2 gtgcaaaagtaattgtggtttttgtcatttaaaagtaatggcaaa 46
>28795_hsa-mir-548a-1:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 35 taatggcaaatattacatttacttttgcacca 66
|||||||||| || ||| ||||||||||||||
Sbjct: 50 taatggcaaaaatcacaattacttttgcacca 19
