miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28797_hsa-mir-548a-3:mirbase
Length = 97
Score = 65.9 bits (33), Expect = 4e-12
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 14 gtgcaaaagtaattgc-agtttttgcattacgttctatggcaaaactgt-aattactttt 71
|||||||||||||||| |||||| |||||| ||| |||||||||||| ||||||||||
Sbjct: 21 gtgcaaaagtaattgcgagttttaccattactttcaatggcaaaactggcaattactttt 80
Query: 72 gtaccaacataatactt 88
| |||||| ||||||||
Sbjct: 81 gcaccaacgtaatactt 97
>28798_hsa-mir-548a-3:mirbase
Length = 97
Score = 65.9 bits (33), Expect = 4e-12
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 14 gtgcaaaagtaattgc-agtttttgcattacgttctatggcaaaactgt-aattactttt 71
|||||||||||||||| |||||| |||||| ||| |||||||||||| ||||||||||
Sbjct: 21 gtgcaaaagtaattgcgagttttaccattactttcaatggcaaaactggcaattactttt 80
Query: 72 gtaccaacataatactt 88
| |||||| ||||||||
Sbjct: 81 gcaccaacgtaatactt 97
>30474_ptr-mir-548f-1:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 29 cagtttttgc-attacgttctatggcaaaa-ctgtaattacttttgtaccaacataata 85
|||||||||| ||||| ||||||||||||| ||||||||||||||| |||||| |||||
Sbjct: 22 cagtttttgccattactttctatggcaaaaactgtaattacttttgcaccaacctaata 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgc 38
|||||| || |||||||||||||| ||||||||||
Sbjct: 80 tattaggttggtgcaaaagtaattacagtttttgc 46
>28854_hsa-mir-548x:mirbase
Length = 75
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 ttagtgcaaaagtaattgcagtttttgcattac 43
|||||||||||||||||||||||||||| ||||
Sbjct: 4 ttagtgcaaaagtaattgcagtttttgcgttac 36
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 72/84 (85%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgc-attacgttctatgg-caaaactgt 61
|||||| || ||||||||||||||||||||||||| ||||| || |||| |||||||
Sbjct: 5 tattaggttggtgcaaaagtaattgcagtttttgctattacttttaatggtaaaaactgc 64
Query: 62 aattacttttgtaccaacataata 85
|||||||||| |||||| |||||
Sbjct: 65 aattacttttacaccaacctaata 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 54 aaaactgtaattacttttgtaccaacataatac 86
||||||| ||||||||||| |||||| ||||||
Sbjct: 36 aaaactgcaattacttttgcaccaacctaatac 4
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagttttt 36
|||||| || ||| |||||||||||||||||||
Sbjct: 88 tattaggttggtgtaaaagtaattgcagttttt 56
>28829_hsa-mir-548f-5:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 54 aaaactgtaattacttttgtaccaacataata 85
|||||||||||||||||||||||||| |||||
Sbjct: 53 aaaactgtaattacttttgtaccaacctaata 84
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagtttttg-cattacgttctatggcaaaactgt- 61
|||||| || |||||||||||||||| ||||||| |||||| ||| | |||||| | |
Sbjct: 11 tattaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctc 70
Query: 62 aattacttttgtaccaacataatactt 88
||||||||||| |||||| ||||||||
Sbjct: 71 aattacttttgcaccaacttaatactt 97
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagtttttg-cattacgttctatggcaaaactgt- 61
|||||| || |||||||||||||||| ||||||| |||||| ||| | |||||| | |
Sbjct: 11 tattaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctc 70
Query: 62 aattacttttgtaccaacataatactt 88
||||||||||| |||||| ||||||||
Sbjct: 71 aattacttttgcaccaacttaatactt 97
>28825_hsa-mir-548f-1:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 71/83 (85%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 5 attagattagtgcaaaagtaattgcagtttttg-cattacgttctatggcaaaa-ctgta 62
||||| || ||||||||||||| ||||||||| |||||| ||| | | ||||| |||||
Sbjct: 1 attaggttggtgcaaaagtaatcacagtttttgacattactttcaaagacaaaaactgta 60
Query: 63 attacttttgtaccaacataata 85
|||||||||| |||||| |||||
Sbjct: 61 attacttttggaccaacctaata 83
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 2e-08
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Minus
Query: 14 gtgcaaaagtaattgcagtttttgc-attacgttctatggc-aaaactgtaattactttt 71
||||||||||||||||||||||||| ||||| ||| ||| | ||||| | |||||||||
Sbjct: 88 gtgcaaaagtaattgcagtttttgctattactttcaatgacaaaaaccgcgattactttt 29
Query: 72 gtaccaacataatac 86
| |||||| ||||||
Sbjct: 28 gcaccaacctaatac 14
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttg-cattacgttctatggcaaaactgt- 61
|||||| || |||||||||||||||| ||||||| |||||| ||| | |||||| | |
Sbjct: 87 tattaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctc 28
Query: 62 aattacttttgtaccaacataatactt 88
||||||||||| |||||| ||||||||
Sbjct: 27 aattacttttgcaccaacttaatactt 1
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagtttttg-cattacgttctatggcaaaactgt- 61
|||||| || |||||||||||||||| ||||||| |||||| ||| | |||||| | |
Sbjct: 11 tattaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctc 70
Query: 62 aattacttttgtaccaacataatact 87
||||||||||| |||||| |||||||
Sbjct: 71 aattacttttgcaccaacttaatact 96
>28001_mml-mir-548e:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 66/77 (85%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 14 gtgcaaaagtaattgc-agtttttgcattacgttctatggcaaaa-ctgtaattactttt 71
|||||||||||||||| |||||| |||||| ||| ||||||||| | | | ||||||||
Sbjct: 21 gtgcaaaagtaattgcgagttttaccattactttcaatggcaaaaccggcagttactttt 80
Query: 72 gtaccaacataatactt 88
| |||||| ||||||||
Sbjct: 81 gcaccaacgtaatactt 97
>28826_hsa-mir-548f-2:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 23 taattgcagtttttg-cattacgttctatggcaaaa-ctgtaattacttttgtaccaaca 80
|||||||||||||| |||||| || ||||||||| ||||||||||||||| ||||||
Sbjct: 27 taattgcagtttttatcattacttttaatggcaaaaactgtaattacttttgcaccaacc 86
Query: 81 taata 85
|||||
Sbjct: 87 taata 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgc 38
|||||| || |||||||||||||| ||||||||||
Sbjct: 91 tattaggttggtgcaaaagtaattacagtttttgc 57
>28827_hsa-mir-548f-3:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 54 aaaactgtaattacttttgtaccaacataatac 86
||||||||||||||||||| |||||| ||||||
Sbjct: 55 aaaactgtaattacttttgcaccaacctaatac 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgca 39
|||||| || |||||||||||||| |||||||||||
Sbjct: 86 tattaggttggtgcaaaagtaattacagtttttgca 51
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 71/84 (84%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagtttttg-cattacgttctatggcaaa-actgt 61
|||||| || ||||||||||||| || ||||||| |||||| ||| |||||||| ||
Sbjct: 2 tattaggttggtgcaaaagtaatcgcggtttttgtcattactttcaatggcaaacaccac 61
Query: 62 aattacttttgtaccaacataata 85
||||||||||| |||||| |||||
Sbjct: 62 aattacttttgcaccaacctaata 85
>30475_ptr-mir-548f-2:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgca 39
|||||| || |||||||||||||| |||||||||||
Sbjct: 86 tattaggttggtgcaaaagtaattacagtttttgca 51
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 aaaactgtaattacttttgtaccaacataata 85
||||||||||||||||||| |||||| |||||
Sbjct: 55 aaaactgtaattacttttgcaccaacctaata 86
>28019_mml-mir-570:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgc 38
|||||| || ||||||| |||||||||||||||||
Sbjct: 1 tattaggttggtgcaaacgtaattgcagtttttgc 35
>28847_hsa-mir-548p:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgc 38
||||| ||| |||||||||||| ||||||||||||
Sbjct: 83 tattacattggtgcaaaagtaactgcagtttttgc 49
>30487_ptr-mir-548p:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttgc 38
||||| ||| |||||||||||| ||||||||||||
Sbjct: 83 tattacattggtgcaaaagtaactgcagtttttgc 49
>28810_hsa-mir-548aj-1:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 ttagtgcaaaagtaattgcagttttt 36
|||||| |||||||||||||||||||
Sbjct: 71 ttagtgtaaaagtaattgcagttttt 46
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagtttttg 37
|||||| || |||||||||||||||| |||||||
Sbjct: 104 tattaggttggtgcaaaagtaattgcggtttttg 71
>30485_ptr-mir-548l:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 14 gtgcaaaagtaattgcagtttttg-cattacgttctatggcaaaac 58
||||| |||||| ||||||||||| |||||| ||||||| ||||||
Sbjct: 74 gtgcacaagtaactgcagtttttgccattactttctatgacaaaac 29
>28809_hsa-mir-548ai:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 tattagattagtgcaaaagtaattgcagttttt 36
|||||| || ||||||| |||||||||||||||
Sbjct: 2 tattaggttggtgcaaaggtaattgcagttttt 34
>28813_hsa-mir-548al:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtgcaaaagtaattgcagtttttgc 38
|||||||||||||||| ||||||||
Sbjct: 6 gtgcaaaagtaattgctgtttttgc 30
>28814_hsa-mir-548am:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtgcaaaagtaattgcagtttttgc 38
|||||||||||||||| ||||||||
Sbjct: 6 gtgcaaaagtaattgcggtttttgc 30
>28831_hsa-mir-548h-1:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagttttt 36
|||||| | ||||||||||||||| ||||||||
Sbjct: 90 tattaggtcagtgcaaaagtaattccagttttt 58
>28846_hsa-mir-548o-2:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtgcaaaagtaattgcagtttttgc 38
|||||||||||||||| ||||||||
Sbjct: 3 gtgcaaaagtaattgcggtttttgc 27
>30476_ptr-mir-548h:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 4 tattagattagtgcaaaagtaattgcagttttt 36
|||||| | ||||||||||||||| ||||||||
Sbjct: 90 tattaggtcagtgcaaaagtaattccagttttt 58
>28804_hsa-mir-548ae-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 aaagtaattgcagtttttgc 38
||||||||||||||||||||
Sbjct: 61 aaagtaattgcagtttttgc 42
>28805_hsa-mir-548ae-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 aaagtaattgcagtttttgc 38
||||||||||||||||||||
Sbjct: 61 aaagtaattgcagtttttgc 42
>28808_hsa-mir-548ah:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 gtgcaaaagtaattgcagtttttg 37
|||||||||||| |||||||||||
Sbjct: 70 gtgcaaaagtaactgcagtttttg 47
>28849_hsa-mir-548s:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tgcaaaagtaattgcagtttttgc 38
||||||| ||||||||||||||||
Sbjct: 5 tgcaaaaataattgcagtttttgc 28
>28882_hsa-mir-570:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 agttattagattagtgcaaaagtaattgcagttttt 36
||||||||| | ||||||| |||||||||||||||
Sbjct: 8 agttattaggtgggtgcaaaggtaattgcagttttt 43
>30472_ptr-mir-548b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 gcaaaagtaattgcagtttt 35
||||||||||||||||||||
Sbjct: 23 gcaaaagtaattgcagtttt 42
