miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28831_hsa-mir-548h-1:mirbase
Length = 102
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcattacttttaactgtaaaaac 45
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 20 caaaagtaatcgcggtttttgtcattacttttaatggtaaaaac 63
>30476_ptr-mir-548h:mirbase
Length = 101
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcattacttttaactgtaaaaac 45
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 20 caaaagtaatcgcggtttttgtcattacttttaatggtaaaaac 63
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 61.9 bits (31), Expect = 4e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcattacttt 32
|||||||||||||||||||||||||||||||
Sbjct: 15 caaaagtaatcgcggtttttgtcattacttt 45
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 61.9 bits (31), Expect = 4e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcattacttt 32
|||||||||||||||||||||||||||||||
Sbjct: 16 caaaagtaatcgcggtttttgtcattacttt 46
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2 caaaagtaatcgcggtttttgtcatta 28
|||||||||| ||||||||||||||||
Sbjct: 91 caaaagtaattgcggtttttgtcatta 65
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcatt 27
||||||||||||||||||||||||||
Sbjct: 28 caaaagtaatcgcggtttttgtcatt 53
>28824_hsa-mir-548e:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 3e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 acaaaagtaatcgcggtttttgtcattacttttaa 35
||||||| |||||||||||||| |||||||||||
Sbjct: 14 acaaaagcaatcgcggtttttgctattacttttaa 48
>28828_hsa-mir-548f-4:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 3e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 2 caaaagtaatcgcggtttttgtcattacttttaactgtaaaaaccac 48
|||||||||| | |||||||||||||||||||| | |||||||||
Sbjct: 82 caaaagtaattacagtttttgtcattacttttaatggcaaaaaccac 36
>28808_hsa-mir-548ah:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 4e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 2 caaaagtaatcgcggtttttgtcattactttta 34
||||||||| || |||||||||||||||||||
Sbjct: 67 caaaagtaactgcagtttttgtcattactttta 35
>28815_hsa-mir-548an:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 4e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 2 caaaagtaatcgcggtttttgtcattactttta 34
|||||| ||| |||||||||| |||||||||||
Sbjct: 71 caaaaggaattgcggtttttgccattactttta 39
>28805_hsa-mir-548ae-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 4 aaagtaatcgcggtttttgtcattacttttaa 35
|||||||| || ||||||| ||||||||||||
Sbjct: 61 aaagtaattgcagtttttgccattacttttaa 30
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcattacttttaactgtaaaaac 45
|||||||||| || ||||||| ||||||||||| ||||||||
Sbjct: 18 caaaagtaattgcagtttttgctattacttttaatggtaaaaac 61
>28813_hsa-mir-548al:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 1 acaaaagtaatcgcggtttttgtcattacttttaa 35
|||||||| || || ||||||| ||||||||||||
Sbjct: 82 acaaaagtcattgccgtttttgccattacttttaa 48
>28825_hsa-mir-548f-1:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 6e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 2 caaaagtaatcgcggtttttgtcattacttt 32
||||||||||| | ||||||| |||||||||
Sbjct: 13 caaaagtaatcacagtttttgacattacttt 43
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 6e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 2 caaaagtaatcgcggtttttgtcatta 28
|||||||||| | ||||||||||||||
Sbjct: 65 caaaagtaattgtggtttttgtcatta 39
>30479_ptr-mir-548i-3:mirbase
Length = 148
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 1 acaaaagtaatcgcggtttttgtcattacttttaa 35
|||||| |||| || ||||||| ||||||||||||
Sbjct: 95 acaaaaataattgctgtttttgccattacttttaa 61
