miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31240_ppy-mir-758:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
Query: 61 tggtccactaaccctcagtatctaatgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tggtccactaaccctcagtatctaatgc 88
>30594_ptr-mir-758:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 2 cctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacct 60
Query: 62 ggtccactaaccctcagtatctaatgc 88
|||||||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatctaatgc 87
>33451_bta-mir-758:mirbase
Length = 88
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctgggtacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
Query: 61 tggtccactaaccctcagtatctaat 86
||||||||||||||||||||||||||
Sbjct: 61 tggtccactaaccctcagtatctaat 86
>27261_eca-mir-758:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctgggtacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
Query: 61 tggtccactaaccctcagtatctaa 85
|||||||||||||||||||||||||
Sbjct: 61 tggtccactaaccctcagtatctaa 85
>26903_cfa-mir-758:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 3 ctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctg 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggtacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctg 60
Query: 63 gtccactaaccctcagtatct 83
|||||||||||||||||||||
Sbjct: 61 gtccactaaccctcagtatct 81
>28113_mml-mir-758:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gcctggatacgtgagatggttgaccagagagcacacgctttatatgtgccgtttgtgacc 60
Query: 61 tggtccactaaccctcagtatctaatgc 88
|||||||||| |||||||||||||||||
Sbjct: 61 tggtccactacccctcagtatctaatgc 88
>33880_oar-mir-758:mirbase
Length = 101
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
|||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 7 gcctgggtacatgaggtggttgaccagagagcacacacttcatttgtgccgtttgtgacc 66
Query: 61 tggtccactaaccctcagtatctaat 86
||||||||||||||||||||||||||
Sbjct: 67 tggtccactaaccctcagtatctaat 92
>33881_oar-mir-758:mirbase
Length = 101
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 gcctggatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacc 60
|||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 7 gcctgggtacatgaggtggttgaccagagagcacacacttcatttgtgccgtttgtgacc 66
Query: 61 tggtccactaaccctcagtatctaat 86
||||||||||||||||||||||||||
Sbjct: 67 tggtccactaaccctcagtatctaat 92
>32346_mmu-mir-758:mirbase
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 12 tgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtccactaa 71
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9 tgaggtggttgaccagagagcacacgctatatttgtgccgtttgtgacctggtccactaa 68
Query: 72 ccctcagtatcta 84
|||||||||||||
Sbjct: 69 ccctcagtatcta 81
>32990_rno-mir-758:mirbase
Length = 78
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 12 tgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtccactaa 71
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7 tgaggtggttgaccagagagcacacgctatatttgtgccgtttgtgacctggtccactaa 66
Query: 72 ccctcagtatct 83
||||||||||||
Sbjct: 67 ccctcagtatct 78
>34134_ssc-mir-758:mirbase
Length = 76
Score = 125 bits (63), Expect = 6e-30
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 tacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtcca 67
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 tacatgaggtggttgaccagagagcacacgctttatt-gtgccgtttgtgacctggtcca 61
Query: 68 ctaaccctcagtatc 82
|||||||||||||||
Sbjct: 62 ctaaccctcagtatc 76
>27170_eca-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
>27894_mml-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
>28641_hsa-mir-411:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
>30366_ptr-mir-411:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 33 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 80
>30995_ppy-mir-411:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
>32062_mmu-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
>32905_rno-mir-411:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 29 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 76
>33364_bta-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
>33840_oar-mir-411a:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
>33841_oar-mir-411a:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
>34087_ssc-mir-411:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 29 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 76
