miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29007_hsa-mir-769:mirbase
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 gccttggtgctgattcctgggctctgacctgagacctctgggttctgagctgtgatgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccttggtgctgattcctgggctctgacctgagacctctgggttctgagctgtgatgttg 60
Query: 61 ctctcgagctgggatctccggggtcttggttcagggccggggcctctgggttccaagc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctcgagctgggatctccggggtcttggttcagggccggggcctctgggttccaagc 118
>33458_bta-mir-769:mirbase
Length = 119
Score = 135 bits (68), Expect = 8e-33
Identities = 102/112 (91%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 3 cttggtgctgattcctgg-gctctgacctgagacctctgggttctgagctgtgatgttgc 61
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 cttggtgctgattcccggcgctctgacctgagacctccgggttctgagctgtgatgttgc 62
Query: 62 tctcgagctgggatctccggggtcttggttcagggccggggcctctgggttc 113
| | |||||||||||| ||||||| ||||||||| |||| |||||||||||
Sbjct: 63 ttcccagctgggatctctggggtctcggttcagggtcgggacctctgggttc 114
>34135_ssc-mir-769:mirbase
Length = 80
Score = 119 bits (60), Expect = 5e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 21 gctctgacctgagacctctgggttctgagctgtgatgttgctctcgagctgggatctccg 80
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 4 gctctgacctgagacctctgggttctgagctgtgatgttgcttccaagctgggatctctg 63
Query: 81 gggtcttggttcaggg 96
||||||||||||||||
Sbjct: 64 gggtcttggttcaggg 79
>34136_ssc-mir-769:mirbase
Length = 80
Score = 119 bits (60), Expect = 5e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 21 gctctgacctgagacctctgggttctgagctgtgatgttgctctcgagctgggatctccg 80
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 4 gctctgacctgagacctctgggttctgagctgtgatgttgcttccaagctgggatctctg 63
Query: 81 gggtcttggttcaggg 96
||||||||||||||||
Sbjct: 64 gggtcttggttcaggg 79
>27268_eca-mir-769:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 7e-18
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 22 ctctgacctgagacctctgggttctgagctgtgatgttgctctcgagctgggatctccgg 81
||||| || ||||||||||||||||||||||||| || ||| ||||||||||||| ||
Sbjct: 4 ctctgcccggagacctctgggttctgagctgtgacgtggcttcggagctgggatctcggg 63
Query: 82 ggtcttggttcaggg 96
|||||||||||||||
Sbjct: 64 ggtcttggttcaggg 78
>27269_eca-mir-769:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 7e-18
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 22 ctctgacctgagacctctgggttctgagctgtgatgttgctctcgagctgggatctccgg 81
||||| || ||||||||||||||||||||||||| || ||| ||||||||||||| ||
Sbjct: 4 ctctgcccggagacctctgggttctgagctgtgacgtggcttcggagctgggatctcggg 63
Query: 82 ggtcttggttcaggg 96
|||||||||||||||
Sbjct: 64 ggtcttggttcaggg 78
>27270_eca-mir-769b:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 1e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 34 acctctgggttctgagctgtgatgttgctctcgagctgggatctccggggtcttggttca 93
|||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 9 acctctgggttctgagctgtgacgtggcttctgagctgggatctcgggggtcttggttca 68
