miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26909_cfa-mir-874:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 61 gggaccgactggctgggc 78
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>31249_ppy-mir-874:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 61 gggaccgactggctgggc 78
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>30605_ptr-mir-874:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
Query: 61 gggaccgactggctggg 77
|||||||||||||||||
Sbjct: 61 gggaccgactggctggg 77
>28126_mml-mir-874:mirbase
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagagtctcgcttcctgccctggcccga 60
Query: 61 gggaccgactggctgggc 78
||||||||||||||||||
Sbjct: 61 gggaccgactggctgggc 78
>33001_rno-mir-874:mirbase
Length = 76
Score = 133 bits (67), Expect = 2e-32
Identities = 76/78 (97%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagagactc--gcttcctgccctggcccga 58
Query: 61 gggaccgactggctgggc 78
||||||||||||||||||
Sbjct: 59 gggaccgactggctgggc 76
>32364_mmu-mir-874:mirbase
Length = 76
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
Query: 61 gggaccgactggctgggc 78
||||||||||||||||||
Sbjct: 59 gggaccgactggctgggc 76
>33460_bta-mir-874:mirbase
Length = 76
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ttagccctgcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccga 60
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttagccctgcggccccacgcaccagggtaagagaga--ctcacttcctgccctggcccga 58
Query: 61 gggaccgactggctgggc 78
||||||||||||||||||
Sbjct: 59 gggaccgactggctgggc 76
>27275_eca-mir-874:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 9 gcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccgagggaccga 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggccccacgcaccagggtaagagagactctcgcttcctgccctggcccgagggaccga 60
