miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29014_hsa-mir-875:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>31250_ppy-mir-875:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>31251_ppy-mir-875:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>30606_ptr-mir-875:mirbase
Length = 75
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaa 75
|||||||||||||||
Sbjct: 61 ttgtgtctcactgaa 75
>28127_mml-mir-875:mirbase
Length = 76
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcctaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>28128_mml-mir-875:mirbase
Length = 76
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcctaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>26910_cfa-mir-875:mirbase
Length = 74
Score = 115 bits (58), Expect = 4e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgaggtt 62
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
Query: 63 gtgtctcactgaac 76
|||| |||||||||
Sbjct: 61 gtgtttcactgaac 74
>33461_bta-mir-875:mirbase
Length = 77
Score = 105 bits (53), Expect = 4e-24
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaacactgag 59
||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 1 ttagtgggactatacctcagttttatcaggtgttatttaaaatcacctggaaatactgag 60
Query: 60 gttgtgtctcactgaac 76
||||||| |||||||||
Sbjct: 61 gttgtgtttcactgaac 77
>31566_oan-mir-875:mirbase
Length = 79
Score = 89.7 bits (45), Expect = 3e-19
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgag 59
|||||||||| |||||||||| ||||||||||||| || || |||||||| || ||||||
Sbjct: 3 ttagtggtacaatacctcagtcttatcaggtgttctttcaattcacctggcaatactgag 62
Query: 60 gttgtgtctcactgaac 76
|||||||||||||||||
Sbjct: 63 gttgtgtctcactgaac 79
>32365_mmu-mir-875:mirbase
Length = 78
Score = 87.7 bits (44), Expect = 1e-18
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgaggtt 62
|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 63 gtgtctcactga 74
||| |||||||
Sbjct: 64 atgtttcactga 75
>32366_mmu-mir-875:mirbase
Length = 78
Score = 87.7 bits (44), Expect = 1e-18
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgaggtt 62
|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 63 gtgtctcactga 74
||| |||||||
Sbjct: 64 atgtttcactga 75
>33002_rno-mir-875:mirbase
Length = 73
Score = 83.8 bits (42), Expect = 2e-17
Identities = 55/58 (94%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgagg 60
|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattcaaatcacctgaaaacactgagg 61
>27463_mdo-mir-875:mirbase
Length = 75
Score = 71.9 bits (36), Expect = 6e-14
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgtt-cttaaaatcacctggaaacactgaggtt 62
||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct: 4 gtggtacaatacctcagtcttatcaggtgttaattaaaatcacctggaaatgctgaggtt 63
Query: 63 gtgtctcactga 74
| || |||||||
Sbjct: 64 gcgtttcactga 75
