miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31254_ppy-mir-877:mirbase
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 61 atgtgtcctcttctccctcctcccag 86
>28131_mml-mir-877:mirbase
Length = 103
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 11 gtagaggagatggcgcaggggacacgggctaagactcgggggttcctgggaccctcagac 70
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 71 atgtgtcctcttctccctcctcccag 96
>33463_bta-mir-877:mirbase
Length = 102
Score = 99.6 bits (50), Expect = 3e-22
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||| | ||
Sbjct: 11 gtagaggagatggcgcaggggacacgggctaagac-tgggggctcccgggaccccccaac 69
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 70 atgtgtcctcttctccctcctcccag 95
>32369_mmu-mir-877:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctg-ggaccctcaga 59
||||||||||||||||||||||||| | | | |||| |||| ||| ||||||| ||
Sbjct: 1 gtagaggagatggcgcaggggacacaaggtaggccttgcgggt--ctgtggacccttgga 58
Query: 60 cgtgtgtcctcttctccctcctcccag 86
| |||||||||||||||||||||||||
Sbjct: 59 catgtgtcctcttctccctcctcccag 85
>33004_rno-mir-877:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||||||||||| | | | |||| |||| |||| |||| |||
Sbjct: 1 gtagaggagatggcgcaggggacacaaggtaggccttgcgggtctgtggg-cccttggac 59
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 60 atgtgtcctcttctccctcctcccag 85
