miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30611_ptr-mir-890:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ggaagtgccctacttggaaaggcatcagttgcttagattacatgtaactattccctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagtgccctacttggaaaggcatcagttgcttagattacatgtaactattccctttct 60
Query: 61 gagtagagtaagtctt 76
||||||||||||||||
Sbjct: 61 gagtagagtaagtctt 76
>31260_ppy-mir-890:mirbase
Length = 77
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 ggaagtgccctacttggaaaggcatcagttgcttagattacatgtaactattccctttct 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ggaagtgccctacttggaaaggcatcagttgcttaaattacatgtaactattccctttct 60
Query: 61 gagtagagtaa 71
|||||||||||
Sbjct: 61 gagtagagtaa 71
>28137_mml-mir-890:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 6 tgccctacttggaaaggcatcagttgcttagattacatgtaactattccctttctgagta 65
||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||
Sbjct: 1 tgccctacttggaaaggcaccagttacttagattacacgtaactgttccctttctgagta 60
Query: 66 gagtaagtctta 77
||||||| ||||
Sbjct: 61 gagtaaggctta 72
>30615_ptr-mir-892b:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 32 cttagattacatgtaactattccctttctgagtagagtaag 72
|||||||||||||| ||| || ||||||||||| |||||||
Sbjct: 31 cttagattacatgtcactgtttcctttctgagtggagtaag 71
>32922_rno-mir-465:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 cctttctgagtagagtaagtctta 77
||||||||||||||||||| ||||
Sbjct: 54 cctttctgagtagagtaaggctta 77
