miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30614_ptr-mir-892a:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 2 cagtgccttactcagaaaggtgccagtcacttacactacatgtcactgtgtcctttctgc 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgccttactcagaaaggtgccagtaacttacactacatgtcactgtgtcctttctgc 60
Query: 62 gtagagtaaggct 74
|||||||||||||
Sbjct: 61 gtagagtaaggct 73
>31263_ppy-mir-892a:mirbase
Length = 74
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 2 cagtgccttactcagaaaggtgccagtcacttacactacatgtcactgtgtcctttctgc 61
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgccctacttagaaaggtgccagtcacttacactacatgtcactgtgtcctttctgt 60
Query: 62 gtagagtaaggctc 75
||||||||||||||
Sbjct: 61 gtagagtaaggctc 74
>28139_mml-mir-892:mirbase
Length = 75
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 gcagtgccttactcagaaaggtgccagtcacttacactacatgtcactgtgtcctttctg 60
||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gcagtgctctacttagaaaggtgccagtcacttacattacatgtcactgtgtcctttctg 60
Query: 61 cgtagagtaaggctc 75
|||||||||||||||
Sbjct: 61 cgtagagtaaggctc 75
>30615_ptr-mir-892b:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 gcagtgccttactcagaaaggtgccagtcacttacactacatgtcactgtgtcctttctg 60
|||||||| || |||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct: 1 gcagtgccctattcagaaaggtgccagtcacttagattacatgtcactgtttcctttctg 60
Query: 61 cgtagagtaaggc 73
|| |||||||||
Sbjct: 61 agtggagtaaggc 73
>31264_ppy-mir-892b:mirbase
Length = 77
Score = 61.9 bits (31), Expect = 6e-11
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1 gcagtgccttactcagaaaggtgccagtcacttacactacatgtcactgtgtcctttctg 60
|||||||| ||||||||||||||||| | | || | || ||||||||| |||||||||
Sbjct: 2 gcagtgccctactcagaaaggtgccatttatgtagattatatgtcactggctcctttctg 61
Query: 61 cgtagagtaaggctc 75
||||||||||||||
Sbjct: 62 ggtagagtaaggctc 76
>28140_mml-mir-892b:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 5 tgccttactcagaaaggtgccagtcacttacactacatgtcactgtgtcctttctgcgta 64
|||| ||||||||||||||||| | | || | || ||||||||| ||||||||| |||
Sbjct: 6 tgccctactcagaaaggtgccatttatgtagattatatgtcactggctcctttctgggta 65
Query: 65 gagtaaggctc 75
|||||||||||
Sbjct: 66 gagtaaggctc 76
>28137_mml-mir-890:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 8e-04
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 24 ccagtcacttacactacatgtcactgtgtcctttctgcgtagagtaaggct 74
||||| ||||| | |||| || ||||| |||||||| |||||||||||||
Sbjct: 20 ccagttacttagattacacgtaactgttccctttctgagtagagtaaggct 70
