miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30629_ptr-mir-944:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 2 ttccagacacatctcatctgatatacaatattttcttaaattgtataaagagaaattatt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccagacacatctcatctgatatacaatattttcttaaattgtataaagagaaattatt 60
Query: 62 gtacatcggatgagctgtgtctgggat 88
|||||||||||||||||||||||||||
Sbjct: 61 gtacatcggatgagctgtgtctgggat 87
>31277_ppy-mir-944:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 gttccagacacatctcatctgatatacaatattttcttaaattgtataaagagaaattat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttccagacacatctcatctgatctacaatattttcttaaattgtataaagagaaattat 60
Query: 61 tgtacatcggatgagctgtgtctgggat 88
|||||||| |||||||||||||||||||
Sbjct: 61 tgtacatcagatgagctgtgtctgggat 88
>28152_mml-mir-944:mirbase
Length = 88
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 gttccagacacatctcatctgatatacaatattttcttaaattgtataaagagaaattat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 gttccagacacatctcatctgatatacaatattttcttaaattgtaaaaagagaaattat 60
Query: 61 tgtacatcggatgagctgtgtctggg 86
|||| ||| |||||| ||||||||||
Sbjct: 61 tgtatatcagatgagatgtgtctggg 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 4 ccagacacatctcatctgatatacaatattttct 37
|||||||||||||||||||||||||||| |||||
Sbjct: 85 ccagacacatctcatctgatatacaataatttct 52
