miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39884_aly-MIR399a:mirbase
Length = 162
Score = 224 bits (113), Expect = 2e-59
Identities = 134/141 (95%)
Strand = Plus / Plus
Query: 6 atcaaaggtggaaatgcattacagggcaagatctctattggcagaaaaccattacttaga 65
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 13 atcaaaggtggaaatgtattacagggtaagatctctattggcaggaaaccattacttaga 72
Query: 66 tctttgcatctctttctgcattgatttgtagtgagttctctgccaaaggagatttgcccg 125
||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 73 tctttgcatctctttatgcattgcttttaagtgagttctctgccaaaggagatttgcccg 132
Query: 126 gtaattcttctgcaccaatat 146
|||||||||||||||||||||
Sbjct: 133 gtaattcttctgcaccaatat 153
>40299_bna-MIR399:mirbase
Length = 102
Score = 202 bits (102), Expect = 6e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 26 acagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgca 60
Query: 86 ttgatttgtagtgagttctctgccaaaggagatttgcccggt 127
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgatttgtagtgagttctctgccaaaggagatttgcccggt 102
>39893_aly-MIR399j:mirbase
Length = 136
Score = 178 bits (90), Expect = 8e-46
Identities = 119/126 (94%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 9 aaaggtggaaatgcattacagggcaagatctctattggcagaaaaccattacttagatct 68
||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct: 1 aaaggtgaaaatgcattacagggcaagatctctattggcaggaaaccattactt-gacct 59
Query: 69 ttgcatctctttctgcattgatttgtagtgagttctctgccaaaggagatttgcccggta 128
|||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 60 ttgcatctctttatgcattgctttgtagtgagttct-tgccaaaggagatttgcccggta 118
Query: 129 attctt 134
||||||
Sbjct: 119 attctt 124
>40092_ath-MIR399a:mirbase
Length = 123
Score = 161 bits (81), Expect = 2e-40
Identities = 113/123 (91%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 17 aaatgcattacagggcaagatctctattggcagaaaaccattacttagatctttgcatct 76
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
Query: 77 ctttctgcattgattt---gtagtgagttctctgccaaaggagatttgcccggtaattct 133
|||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
Query: 134 tct 136
|||
Sbjct: 121 tct 123
>39891_aly-MIR399h:mirbase
Length = 106
Score = 151 bits (76), Expect = 2e-37
Identities = 102/108 (94%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 23 attacagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttct 82
||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |
Sbjct: 1 attacagggcaagatctctattggcaggaaaccattactt-gacctttgcatctctttat 59
Query: 83 gcattgatttgtagtgagttctctgccaaaggagatttgcccggtaat 130
|||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 60 gcattgctttgtagtgagttct-tgccaaaggagatttgcccggtaat 106
>40097_ath-MIR399f:mirbase
Length = 118
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 90 tttgtagtgagttctctgccaaaggagatttgcccggtaattct 133
||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcccggtaattct 115
>39889_aly-MIR399f:mirbase
Length = 167
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 90 tttgtagtgagttctctgccaaaggagatttgcccggtaattct 133
||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 96 tttgtggtgagctctctgccaaaggagatttgccctgtaattct 139
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 10 aaggtggaaatgcattacagggcaagatctctattggcagaaaaccattactt 62
|||||| |||| ||||||||||||||||| | ||||||||||| | |||||||
Sbjct: 18 aaggtgcaaatacattacagggcaagatcaccattggcagaaatctattactt 70
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattcttct 136
|||||||||||||||||||||||| |||||||||
Sbjct: 79 ctctgccaaaggagatttgcccggcaattcttct 112
>41246_csi-MIR399a:mirbase
Length = 155
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgcccggtaattcttctgca 139
||||||||||||||||||||||| ||||| ||||||
Sbjct: 112 tctgccaaaggagatttgcccggcaattcctctgca 147
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgcccggtaattcttc 135
||||||||||||||||||||||| ||||||||
Sbjct: 94 tctgccaaaggagatttgcccggcaattcttc 125
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattctt 134
|||||||||||||||||||||||| |||||||
Sbjct: 92 ctctgccaaaggagatttgcccggcaattctt 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 tgcattacagggcaagatctctattggcag 49
|||||||||||||||||| || ||||||||
Sbjct: 14 tgcattacagggcaagatttccattggcag 43
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccggtaattcttc 135
||||||||||||||||||||| ||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccggtaattcttc 135
||||||||||||||||||||| ||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>40095_ath-MIR399d:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 ttctctgccaaaggagatttgccc 124
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>39887_aly-MIR399d:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 ttctctgccaaaggagatttgccc 124
||||||||||||||||||||||||
Sbjct: 79 ttctctgccaaaggagatttgccc 102
>42046_osa-MIR399f:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tctctgccaaaggagatttgccc 124
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgccc 124
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>41457_ptc-MIR399j:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 tgcattacagggcaagatctctattggcag 49
||||||||||||||||| ||| ||||||||
Sbjct: 1 tgcattacagggcaagacctccattggcag 30
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattcttct 136
||||||||||||||||||| |||| || ||||||
Sbjct: 79 ctctgccaaaggagatttgtccggcaaatcttct 112
>40384_rco-MIR399b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgcccgg 126
||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccgg 101
>42047_osa-MIR399g:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgccc 97
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>40387_rco-MIR399e:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 81 tctgccaaaggagatttgccc 101
>40385_rco-MIR399c:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccgg 126
|||||||||||||||||||||
Sbjct: 71 tgccaaaggagatttgcccgg 91
>40096_ath-MIR399e:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcc 123
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>39888_aly-MIR399e:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcc 123
|||||||||||||||||||||
Sbjct: 115 ctctgccaaaggagatttgcc 135
>42824_zma-MIR399f:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgcccggtaattcttctgcac 140
||||||||||| |||||||| | ||||| |||||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattcatctgcac 100
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgccc 105
>42045_osa-MIR399e:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgccc 95
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgccc 97
>39892_aly-MIR399i:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 91 ctgccaaaggagatttgccc 110
>39890_aly-MIR399g:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 110 ctgccaaaggagatttgccc 129
