miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40470_gma-MIR393:mirbase
          Length = 120

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 15 aggaggcatccaaagggatcgcattgatcccaaatc 50
          ||||||||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatcccaaatc 38



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 91  ttgggatcatgctatctctttggatttctcctt 123
           |||||||||||||||| ||||||||||||||||
Sbjct: 87  ttgggatcatgctatccctttggatttctcctt 119




>41642_vvi-MIR393b:mirbase
          Length = 83

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 15 aggaggcatccaaagggatcgcattgatcccaaa 48
          ||||||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatcccaaa 36



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 51  ggatcatgctatccctttggattcctcctt 80




>40707_mtr-MIR393b:mirbase
          Length = 119

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 18 aggcatccaaagggatcgcattgatcccaaatct 51
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  aggcatccaaagggatcgcattgatcccaaatct 34



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 91  ttgggatcatgctatctctttggatt 116
           |||||||||||||||| |||||||||
Sbjct: 91  ttgggatcatgctatccctttggatt 116




>41417_ptc-MIR393a:mirbase
          Length = 85

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 15 aggaggcatccaaagggatcgcattgatcccaa 47
          |||||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatcccaa 35



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcatgctatctctttggatttctcct 122
           ||||||||||||| ||||||||| |||||
Sbjct: 57  ggatcatgctatccctttggattcctcct 85




>41418_ptc-MIR393b:mirbase
          Length = 84

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 15 aggaggcatccaaagggatcgcattgatccc 45
          |||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatccc 33



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcatgctatctctttggatttctcct 122
           ||||||||||||| ||||||||| |||||
Sbjct: 56  ggatcatgctatccctttggattcctcct 84




>41132_tcc-MIR393a:mirbase
          Length = 118

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 aggaggcatccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||||||||||
Sbjct: 13 aggaggcatccaaagggatcgcattgatcc 42



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 94  ggatcatgctatctctttggatttctccttcggtt 128
           ||||||||||||| ||||||||| |||||| ||||
Sbjct: 78  ggatcatgctatccctttggattcctcctttggtt 112




>40706_mtr-MIR393:mirbase
          Length = 135

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 aggaggcatccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||||||||||
Sbjct: 13 aggaggcatccaaagggatcgcattgatcc 42



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 91  ttgggatcatgctatctctttggatttctcctt 123
           |||||||||||| ||| ||||||||||||||||
Sbjct: 93  ttgggatcatgccatccctttggatttctcctt 125




>42566_sbi-MIR393:mirbase
          Length = 139

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 aggaggcatccaaagggatcgcattgatcc 44
          |||| |||||||||||||||||||||||||
Sbjct: 12 aggaagcatccaaagggatcgcattgatcc 41




>39865_aly-MIR393a:mirbase
          Length = 147

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 94  ggatcatgctatctctttggatttctccttcggt 127
           |||||||||||||||||||||||  |||||||||
Sbjct: 110 ggatcatgctatctctttggattcatccttcggt 143



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 17 atccaaagggatcgcattgatcc 39




>41997_osa-MIR393:mirbase
          Length = 115

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gcatccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||||
Sbjct: 8  gcatccaaagggatcgcattgatcc 32




>41774_bdi-MIR393a:mirbase
          Length = 159

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gcatccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||||
Sbjct: 33 gcatccaaagggatcgcattgatcc 57




>39866_aly-MIR393b:mirbase
          Length = 169

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gcatccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||||
Sbjct: 15 gcatccaaagggatcgcattgatcc 39




>41641_vvi-MIR393a:mirbase
          Length = 126

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 tccaaagggatcgcattgatccca 46
          ||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34




>41238_csi-MIR393:mirbase
          Length = 145

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatcc 42




>40076_ath-MIR393b:mirbase
          Length = 160

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32




>40075_ath-MIR393a:mirbase
          Length = 133

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  ggatcatgctatctctttggatt 116
           |||||||||||||||||||||||
Sbjct: 103 ggatcatgctatctctttggatt 125




>42787_zma-MIR393b:mirbase
          Length = 108

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatcc 23




>40295_bna-MIR393:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>42788_zma-MIR393c:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatc 22




>42786_zma-MIR393a:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>42567_sbi-MIR393b:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>41999_osa-MIR393b:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>41998_osa-MIR393b:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>41775_bdi-MIR393b:mirbase
          Length = 174

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatc 62




>41420_ptc-MIR393d:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41419_ptc-MIR393c:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41133_tcc-MIR393b:mirbase
          Length = 158

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>41054_ghr-MIR393:mirbase
          Length = 139

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>40373_rco-MIR393:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 6  tccaaagggatcgcattgatc 26