miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30653_ptr-mir-1233-3:mirbase
Length = 80
Score = 145 bits (73), Expect = 6e-36
Identities = 80/81 (98%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 2 tgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 61
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagtgggaggc-agtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 59
Query: 62 ctgagccctgtcctcccgcag 82
|||||||||||||||||||||
Sbjct: 60 ctgagccctgtcctcccgcag 80
>30651_ptr-mir-1233-1:mirbase
Length = 83
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 gtgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcg 60
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcatggcagggggagctgcagggccgtcggaggggccccagca 60
Query: 61 tctgagccctgtcctcccgcagg 83
|||||||||||||||||||||||
Sbjct: 61 tctgagccctgtcctcccgcagg 83
>28160_mml-mir-1233:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 gtgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcg 60
|||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcagggcagggggagctgcagggccttcggaggggccccagcg 60
Query: 61 tctgagccctgtcctcccgcag 82
||||||||||||||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>29078_hsa-mir-1233-1:mirbase
Length = 82
Score = 131 bits (66), Expect = 8e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 1 gtgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcg 60
|||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcacggcagggggagctgcagggctatgggaggggccccagcg 60
Query: 61 tctgagccctgtcctcccgcag 82
||||||||||||||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>29079_hsa-mir-1233-2:mirbase
Length = 82
Score = 131 bits (66), Expect = 8e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 1 gtgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcg 60
|||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcacggcagggggagctgcagggctatgggaggggccccagcg 60
Query: 61 tctgagccctgtcctcccgcag 82
||||||||||||||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>31300_ppy-mir-1233:mirbase
Length = 82
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 gtgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcg 60
||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 gtgagtgggagaccagggcacggcagggggagctgcagggctgtgggaggggccccagcg 60
Query: 61 tctgagccctgtcctcccgcag 82
|||||||||| |||||||||||
Sbjct: 61 tctgagccctttcctcccgcag 82
