miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30652_ptr-mir-1233-2:mirbase
Length = 83
Score = 145 bits (73), Expect = 5e-36
Identities = 80/81 (98%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgagtgggaggc-agtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 61
Query: 60 ctgagccctgtcctcccgcag 80
|||||||||||||||||||||
Sbjct: 62 ctgagccctgtcctcccgcag 82
>28160_mml-mir-1233:mirbase
Length = 82
Score = 121 bits (61), Expect = 8e-29
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgagtgggaggc-agtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 59
|||||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 tgagtgggaggccagggcagggcagggggagctgcagggccttcggaggggccccagcgt 61
Query: 60 ctgagccctgtcctcccgcag 80
|||||||||||||||||||||
Sbjct: 62 ctgagccctgtcctcccgcag 82
>30651_ptr-mir-1233-1:mirbase
Length = 83
Score = 121 bits (61), Expect = 8e-29
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgagtgggaggc-agtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 59
|||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 2 tgagtgggaggccagggcatggcagggggagctgcagggccgtcggaggggccccagcat 61
Query: 60 ctgagccctgtcctcccgcag 80
|||||||||||||||||||||
Sbjct: 62 ctgagccctgtcctcccgcag 82
>29078_hsa-mir-1233-1:mirbase
Length = 82
Score = 113 bits (57), Expect = 2e-26
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgagtgggaggc-agtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 59
|||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2 tgagtgggaggccagggcacggcagggggagctgcagggctatgggaggggccccagcgt 61
Query: 60 ctgagccctgtcctcccgcag 80
|||||||||||||||||||||
Sbjct: 62 ctgagccctgtcctcccgcag 82
>29079_hsa-mir-1233-2:mirbase
Length = 82
Score = 113 bits (57), Expect = 2e-26
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgagtgggaggc-agtgcacggcagggggagctgcagggccgtcggaggggccccagcgt 59
|||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2 tgagtgggaggccagggcacggcagggggagctgcagggctatgggaggggccccagcgt 61
Query: 60 ctgagccctgtcctcccgcag 80
|||||||||||||||||||||
Sbjct: 62 ctgagccctgtcctcccgcag 82
>31300_ppy-mir-1233:mirbase
Length = 82
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 16 gcacggcagggggagctgcagggccgtcggaggggccccagcgtctgagccctgtcctcc 75
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 18 gcacggcagggggagctgcagggctgtgggaggggccccagcgtctgagccctttcctcc 77
Query: 76 cgcag 80
|||||
Sbjct: 78 cgcag 82
