miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29093_hsa-mir-1248:mirbase
Length = 106
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 61
Query: 61 tgcaataatgctagcagagtacacacaagaagaaaagtaacagca 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgcaataatgctagcagagtacacacaagaagaaaagtaacagca 106
>31308_ppy-mir-1248:mirbase
Length = 106
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 61
Query: 61 tgcaataatgctagcagagtacacacaagaagaaaagtaacagca 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgcaataatgctagcagagtacacacaagaagaaaagtaacagca 106
>27288_eca-mir-1248:mirbase
Length = 93
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 4 ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgc 63
|||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 2 ccttcttgtataagcactgtgctaaaattgcagaaactaggatcacttcttggtttttgt 61
Query: 64 aataatgctagcagagtacacacaagaagaaa 95
||||||||||||||||||||||||||||||||
Sbjct: 62 aataatgctagcagagtacacacaagaagaaa 93
>33473_bta-mir-1248-1:mirbase
Length = 105
Score = 79.8 bits (40), Expect = 4e-16
Identities = 83/95 (87%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 1 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 60
|||||||||||||||||||||||||||||||| |||| || | || | |||||||||
Sbjct: 2 ttaccttcttgtataagcactgtgctaaaattacagaaaccaaga--tagccttggtttt 59
Query: 61 tgcaataatgctagcagagta-cacacaagaagaa 94
|| |||||||||||||||||| ||||||||||||
Sbjct: 60 tgtaataatgctagcagagtattacacaagaagaa 94
>33474_bta-mir-1248-2:mirbase
Length = 105
Score = 77.8 bits (39), Expect = 1e-15
Identities = 82/94 (87%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 2 taccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggttttt 61
||||||||||||||||||||||||||||||| |||| || | || | ||||||||||
Sbjct: 3 taccttcttgtataagcactgtgctaaaattacagaaaccaaga--tagccttggttttt 60
Query: 62 gcaataatgctagcagagta-cacacaagaagaa 94
| |||||||||||||||||| ||||||||||||
Sbjct: 61 gtaataatgctagcagagtattacacaagaagaa 94
