miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30717_ptr-mir-1302-4:mirbase
Length = 137
Score = 264 bits (133), Expect = 2e-71
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgcccagttagtttgaattttagataaacaacgaataatttcgtagcataaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
|||||||||||||||||
Sbjct: 121 tcaaaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 15
>30716_ptr-mir-1302-3:mirbase
Length = 137
Score = 262 bits (132), Expect = 6e-71
Identities = 135/136 (99%)
Strand = Plus / Plus
Query: 2 gatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgtc 61
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgcccagttagtttgaattttagataaacaacgaataatttcgtagcataaatatgtc 60
Query: 62 ccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagatt 120
Query: 122 caaaattaagcatttt 137
||||||||||||||||
Sbjct: 121 caaaattaagcatttt 136
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 114 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 55
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 54 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 14
>29160_hsa-mir-1302-10:mirbase
Length = 138
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgcccagctagtttgaattttagataaacaacgaataatttcgtagcataaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
||| |||||||||||||
Sbjct: 121 tcagaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 15
>29161_hsa-mir-1302-11:mirbase
Length = 138
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgcccagctagtttgaattttagataaacaacgaataatttcgtagcataaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
||| |||||||||||||
Sbjct: 121 tcagaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 15
>29162_hsa-mir-1302-2:mirbase
Length = 138
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgcccagctagtttgaattttagataaacaacgaataatttcgtagcataaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
||| |||||||||||||
Sbjct: 121 tcagaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 15
>29163_hsa-mir-1302-3:mirbase
Length = 138
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 1 ggatgcccagctagtttgaattttagataaacaacgaataatttcgtagcataaatattt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
|||||||||||||||||
Sbjct: 121 tcaaaattaagcatttt 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 85/103 (82%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || |||||| |||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggaaata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 15
>29169_hsa-mir-1302-9:mirbase
Length = 138
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgcccagctagtttgaattttagataaacaacgaataatttcgtagcataaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
||| |||||||||||||
Sbjct: 121 tcagaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
|||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctacgaaa--ttattcgttgtttatctaaaattcaaa 15
>30718_ptr-mir-1302-5:mirbase
Length = 137
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ggatgcccagttagtttgaattttagataaacaacgaataatttcttagcataaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
||| |||||||||||||
Sbjct: 121 tcagaattaagcatttt 137
Score = 65.9 bits (33), Expect = 7e-12
Identities = 87/103 (84%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
||||||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttatgctaagaaa--ttattcgttgtttatctaaaattcaaa 15
>31356_ppy-mir-1302-1:mirbase
Length = 137
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct: 1 ggatgcccagttagtttgaattttagataaacaacgaataatttcttagcctaaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
|||||||||||||||||
Sbjct: 121 tcaaaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
||| ||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttaggctaagaaa--ttattcgttgtttatctaaaattcaaa 15
>31357_ppy-mir-1302-2:mirbase
Length = 137
Score = 248 bits (125), Expect = 9e-67
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 1 ggatgcccagttagtttgaattctagataaacaacgaataatttcgtagcataaatatgt 60
|||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct: 1 ggatgcccagttagtttgaattttagataaacaacgaataatttcttagcctaaatatgt 60
Query: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagat 120
Query: 121 tcaaaattaagcatttt 137
|||||||||||||||||
Sbjct: 121 tcaaaattaagcatttt 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/103 (83%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 25 agataaacaacgaataat--ttcgtagcataaatatgtcccaagcttagtttgggacata 82
||||||||||| |||||| || |||||||| |||||||||| || || ||||||||||
Sbjct: 115 agataaacaaccaataatgttttttagcataagtatgtcccaaactaagcttgggacata 56
Query: 83 cttatgctaaaaaacattattggttgtttatctgagattcaaa 125
||| ||||| ||| ||||| ||||||||||| | |||||||
Sbjct: 55 tttaggctaagaaa--ttattcgttgtttatctaaaattcaaa 15
>27303_eca-mir-1302d-4:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 57 tttgggacatacttatgctaaaaaa 81
>29166_hsa-mir-1302-6:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 55 tttgggacatacttatgctaaaaaa 79
>29168_hsa-mir-1302-8:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 65 tttgggacatacttatgctaaaaaa 89
>30719_ptr-mir-1302-6:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 55 tttgggacatacttatgctaaaaaa 79
>30721_ptr-mir-1302-8:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 65 tttgggacatacttatgctaaaaaa 89
>31358_ppy-mir-1302-3:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 55 tttgggacatacttatgctaaaaaa 79
>31360_ppy-mir-1302-5:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaaa 96
|||||||||||||||||||||||||
Sbjct: 65 tttgggacatacttatgctaaaaaa 89
>29159_hsa-mir-1302-1:mirbase
Length = 143
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaa 95
||||||||||||||||||||||||
Sbjct: 74 tttgggacatacttatgctaaaaa 97
>29167_hsa-mir-1302-7:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ttgggacatacttatgctaaaaaa 96
||||||||||||||||||||||||
Sbjct: 39 ttgggacatacttatgctaaaaaa 62
>30714_ptr-mir-1302-1:mirbase
Length = 142
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaaa 95
||||||||||||||||||||||||
Sbjct: 74 tttgggacatacttatgctaaaaa 97
>30720_ptr-mir-1302-7:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ttgggacatacttatgctaaaaaa 96
||||||||||||||||||||||||
Sbjct: 39 ttgggacatacttatgctaaaaaa 62
>31359_ppy-mir-1302-4:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ttgggacatacttatgctaaaaaa 96
||||||||||||||||||||||||
Sbjct: 40 ttgggacatacttatgctaaaaaa 63
>29164_hsa-mir-1302-4:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaa 94
|||||||||||||||||||||||
Sbjct: 76 tttgggacatacttatgctaaaa 98
>29165_hsa-mir-1302-5:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttgggacatacttatgctaaaa 94
|||||||||||||||||||||||
Sbjct: 76 tttgggacatacttatgctaaaa 98
