miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41775_bdi-MIR393b:mirbase
Length = 174
Score = 157 bits (79), Expect = 2e-39
Identities = 100/107 (93%)
Strand = Plus / Minus
Query: 9 aattccaaagggattgcactgttcttgcatatgcctcgatccctccctccgttgattcat 68
||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||
Sbjct: 141 aattccaaagggattgcactgatcttgcatatgcatcgatccatccatccgttgattcat 82
Query: 69 gcttggatgccgctgaagaaatcaatgcgatccctttggagtcctcc 115
|||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 81 gcttggatgcagctgatgagatcaatgcgatccctttggagtcctcc 35
>42786_zma-MIR393a:mirbase
Length = 126
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttggagtcctcc 115
|||||||||||||||||||||||||||
Sbjct: 40 atcaatgcgatccctttggagtcctcc 14
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 7 aaaattccaaagggattgcactgttcttg 35
||||||||||||||||||||||| |||||
Sbjct: 112 aaaattccaaagggattgcactgatcttg 84
>41999_osa-MIR393b:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttggagtcctcc 115
|||||||||||||||||||||||||||
Sbjct: 46 atcaatgcgatccctttggagtcctcc 20
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 aaaattccaaagggattgcactg 29
|||||||||||||||||||||||
Sbjct: 126 aaaattccaaagggattgcactg 104
>41998_osa-MIR393b:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttggagtcctcc 115
|||||||||||||||||||||||||||
Sbjct: 46 atcaatgcgatccctttggagtcctcc 20
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 aaaattccaaagggattgcactg 29
|||||||||||||||||||||||
Sbjct: 126 aaaattccaaagggattgcactg 104
>42788_zma-MIR393c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttggag 109
|||||||||||||||||||||
Sbjct: 21 atcaatgcgatccctttggag 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 9 aattccaaagggattgcactg 29
|||||||||||||||||||||
Sbjct: 97 aattccaaagggattgcactg 77
>42567_sbi-MIR393b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ttccaaagggattgcactgttcttg 35
||||||||||||||||||| |||||
Sbjct: 84 ttccaaagggattgcactgatcttg 60
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 20 atcaatgcgatccctttgga 1
>41133_tcc-MIR393b:mirbase
Length = 158
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttggag 109
|||||||||||||||||||||
Sbjct: 40 atcaatgcgatccctttggag 20
>41054_ghr-MIR393:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttggag 109
|||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttggag 10
>42787_zma-MIR393b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 21 atcaatgcgatccctttgga 2
>42566_sbi-MIR393:mirbase
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 39 atcaatgcgatccctttgga 20
>41997_osa-MIR393:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41774_bdi-MIR393a:mirbase
Length = 159
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 55 atcaatgcgatccctttgga 36
>41642_vvi-MIR393b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41641_vvi-MIR393a:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41420_ptc-MIR393d:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41419_ptc-MIR393c:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41418_ptc-MIR393b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41417_ptc-MIR393a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>41238_csi-MIR393:mirbase
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 40 atcaatgcgatccctttgga 21
>41132_tcc-MIR393a:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 40 atcaatgcgatccctttgga 21
>40707_mtr-MIR393b:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 25 atcaatgcgatccctttgga 6
>40706_mtr-MIR393:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 40 atcaatgcgatccctttgga 21
>40470_gma-MIR393:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>40373_rco-MIR393:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 25 atcaatgcgatccctttgga 6
>40295_bna-MIR393:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 20 atcaatgcgatccctttgga 1
>40076_ath-MIR393b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>40075_ath-MIR393a:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 30 atcaatgcgatccctttgga 11
>39866_aly-MIR393b:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 37 atcaatgcgatccctttgga 18
>39865_aly-MIR393a:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 atcaatgcgatccctttgga 108
||||||||||||||||||||
Sbjct: 37 atcaatgcgatccctttgga 18
