miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41775_bdi-MIR393b:mirbase
Length = 174
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gctagtggaggactccaaagggatcgcattgatctcatcagctgcatccaagcatgaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 gctagtggaggactccaaagggatcgcattgatctcatcagctgcatccaagcatgaatc 88
Query: 61 aacggatggatggatcgatgcatatgcaagatcagtgcaatccctttggaattctcgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aacggatggatggatcgatgcatatgcaagatcagtgcaatccctttggaattctcgact 148
Query: 121 cg 122
||
Sbjct: 149 cg 150
>41999_osa-MIR393b:mirbase
Length = 132
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 2 ctagtggaggactccaaagggatcgcattgatct 35
||||||||||||||||||||||||||||||||||
Sbjct: 15 ctagtggaggactccaaagggatcgcattgatct 48
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 gatcagtgcaatccctttggaatt 113
||||||||||||||||||||||||
Sbjct: 101 gatcagtgcaatccctttggaatt 124
>41998_osa-MIR393b:mirbase
Length = 132
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 2 ctagtggaggactccaaagggatcgcattgatct 35
||||||||||||||||||||||||||||||||||
Sbjct: 15 ctagtggaggactccaaagggatcgcattgatct 48
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 gatcagtgcaatccctttggaatt 113
||||||||||||||||||||||||
Sbjct: 101 gatcagtgcaatccctttggaatt 124
>42786_zma-MIR393a:mirbase
Length = 126
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 gtggaggactccaaagggatcgcattgatct 35
|||||||||||||||||||||||||||||||
Sbjct: 12 gtggaggactccaaagggatcgcattgatct 42
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 87 caagatcagtgcaatccctttggaattctcgactcg 122
||||||||||||||||||||||||||| || |||||
Sbjct: 84 caagatcagtgcaatccctttggaattttccactcg 119
>42567_sbi-MIR393b:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 caagatcagtgcaatccctttggaa 111
|||||||||||||||||||||||||
Sbjct: 60 caagatcagtgcaatccctttggaa 84
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatctca 37
||||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatctca 24
>42788_zma-MIR393c:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 ctccaaagggatcgcattgatct 35
|||||||||||||||||||||||
Sbjct: 1 ctccaaagggatcgcattgatct 23
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tcagtgcaatccctttggaatt 113
||||||||||||||||||||||
Sbjct: 76 tcagtgcaatccctttggaatt 97
>41133_tcc-MIR393b:mirbase
Length = 158
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 ctccaaagggatcgcattgatct 35
|||||||||||||||||||||||
Sbjct: 20 ctccaaagggatcgcattgatct 42
>41054_ghr-MIR393:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 ctccaaagggatcgcattgatct 35
|||||||||||||||||||||||
Sbjct: 10 ctccaaagggatcgcattgatct 32
>41420_ptc-MIR393d:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatct 35
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatct 32
>41419_ptc-MIR393c:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatct 35
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatct 32
>40373_rco-MIR393:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatct 35
||||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatct 27
>42787_zma-MIR393b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatc 22
>42566_sbi-MIR393:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 20 tccaaagggatcgcattgatc 40
>41997_osa-MIR393:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41774_bdi-MIR393a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 36 tccaaagggatcgcattgatc 56
>41642_vvi-MIR393b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41641_vvi-MIR393a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41418_ptc-MIR393b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41417_ptc-MIR393a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41238_csi-MIR393:mirbase
Length = 145
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>41132_tcc-MIR393a:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>40707_mtr-MIR393b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
>40706_mtr-MIR393:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>40470_gma-MIR393:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40295_bna-MIR393:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>40076_ath-MIR393b:mirbase
Length = 160
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40075_ath-MIR393a:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>39866_aly-MIR393b:mirbase
Length = 169
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatc 38
>39865_aly-MIR393a:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 tccaaagggatcgcattgatc 34
|||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatc 38
