miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
Query: 61 gagcctgg 68
||||||||
Sbjct: 61 gagcctgg 68
>32720_rno-mir-125a:mirbase
Length = 85
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 69
Query: 61 gagcctgg 68
||||||||
Sbjct: 70 gagcctgg 77
>32721_rno-mir-125a:mirbase
Length = 85
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 69
Query: 61 gagcctgg 68
||||||||
Sbjct: 70 gagcctgg 77
>27009_eca-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgg 60
Query: 61 gagcctgg 68
||||||||
Sbjct: 61 gagcctgg 68
>27010_eca-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgg 60
Query: 61 gagcctgg 68
||||||||
Sbjct: 61 gagcctgg 68
>27717_mml-mir-125a:mirbase
Length = 86
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10 ctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgg 69
Query: 61 gagcctgg 68
||||||||
Sbjct: 70 gagcctgg 77
>27718_mml-mir-125a:mirbase
Length = 86
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10 ctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgg 69
Query: 61 gagcctgg 68
||||||||
Sbjct: 70 gagcctgg 77
>33201_bta-mir-125a:mirbase
Length = 86
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
Query: 65 ctgg 68
||||
Sbjct: 74 ctgg 77
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 72
Query: 64 cctgg 68
|||||
Sbjct: 73 cctgg 77
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 72
Query: 64 cctgg 68
|||||
Sbjct: 73 cctgg 77
>30209_ptr-mir-125a:mirbase
Length = 85
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 71
Query: 64 cctgg 68
|||||
Sbjct: 72 cctgg 76
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 72
Query: 64 cctgg 68
|||||
Sbjct: 73 cctgg 77
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 72
Query: 64 cctgg 68
|||||
Sbjct: 73 cctgg 77
>33970_ssc-mir-125a:mirbase
Length = 80
Score = 119 bits (60), Expect = 2e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
Query: 65 ctgg 68
||||
Sbjct: 70 ctgg 73
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 111 bits (56), Expect = 6e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 6 tccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagcc 65
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 60
>34278_dre-mir-125a-2:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 2e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 62
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
>34735_tni-mir-125a:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 5e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 62
||||||||||||||| ||||||||| |||| | ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 61
>34588_fru-mir-125a:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 1e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 62
||||||||||||||| ||||||||| || | | ||||||||||||||| |||||||
Sbjct: 8 gtccctgagaccctt-aacctgtgatgatatgaaaggtcacaggtgaggtccttggga 64
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttct 57
||||||||||||| |||||||||||||| | | |||||||||||||||||
Sbjct: 1 gtccctgagaccc-ttaacctgtgaggaagacatatgtcacaggtgaggttct 52
>34277_dre-mir-125a-1:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 5 gtccctgagaccctttaacctgtgagg 31
||||||||||||| |||||||||||||
Sbjct: 13 gtccctgagaccc-ttaacctgtgagg 38
