miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>31847_mmu-mir-126:mirbase
          Length = 73

 Score =  145 bits (73), Expect = 5e-36
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60

                       
Query: 61 taatgcgcggtca 73
          |||||||||||||
Sbjct: 61 taatgcgcggtca 73




>32725_rno-mir-126:mirbase
          Length = 73

 Score =  137 bits (69), Expect = 1e-33
 Identities = 72/73 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60

                       
Query: 61 taatgcgcggtca 73
          ||||||| |||||
Sbjct: 61 taatgcgtggtca 73




>33060_rno-mir-3567:mirbase
          Length = 118

 Score =  137 bits (69), Expect = 1e-33
 Identities = 72/73 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1  tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 35

                       
Query: 61 taatgcgcggtca 73
          ||||||| |||||
Sbjct: 34 taatgcgtggtca 22




>33204_bta-mir-126:mirbase
          Length = 73

 Score =  123 bits (62), Expect = 2e-29
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67

                
Query: 68 cggtca 73
          | ||||
Sbjct: 68 ctgtca 73




>27013_eca-mir-126:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67

           
Query: 68 c 68
          |
Sbjct: 68 c 68




>27014_eca-mir-126:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67

           
Query: 68 c 68
          |
Sbjct: 68 c 68




>27721_mml-mir-126:mirbase
          Length = 85

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 73

           
Query: 68 c 68
          |
Sbjct: 74 c 74




>28434_hsa-mir-126:mirbase
          Length = 85

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 73

           
Query: 68 c 68
          |
Sbjct: 74 c 74




>30212_ptr-mir-126:mirbase
          Length = 84

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72

           
Query: 68 c 68
          |
Sbjct: 73 c 73




>30821_ppy-mir-126:mirbase
          Length = 81

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 73

           
Query: 68 c 68
          |
Sbjct: 74 c 74




>33973_ssc-mir-126:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67

           
Query: 68 c 68
          |
Sbjct: 68 c 68




>25944_gga-mir-126:mirbase
          Length = 84

 Score =  119 bits (60), Expect = 3e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73




>26455_tgu-mir-126:mirbase
          Length = 132

 Score =  119 bits (60), Expect = 3e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 123




>26692_cfa-mir-126:mirbase
          Length = 59

 Score =  117 bits (59), Expect = 1e-27
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                     
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 59




>27377_mdo-mir-126:mirbase
          Length = 69

 Score =  111 bits (56), Expect = 7e-26
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                      
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5  cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 64




>31481_oan-mir-126:mirbase
          Length = 110

 Score =  109 bits (55), Expect = 3e-25
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                     
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
          |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 29 cattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatgcg 87




>25767_xtr-mir-126:mirbase
          Length = 69

 Score =  103 bits (52), Expect = 2e-23
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                      
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
          |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 8  cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgcgc 67




>34590_fru-mir-126:mirbase
          Length = 63

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                    
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
          ||||||||||||||||||||||| || ||||   ||||||||||||||||||||||||
Sbjct: 6  cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63




>34737_tni-mir-126:mirbase
          Length = 63

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                    
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
          ||||||||||||||||||||||| || ||||   ||||||||||||||||||||||||
Sbjct: 6  cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63




>34284_dre-mir-126b:mirbase
          Length = 103

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                
Query: 9  cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaata 62
          ||||||||||||||||||||||| || ||||   ||||||||||||||||||||
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaata 76




>34283_dre-mir-126a:mirbase
          Length = 101

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                     
Query: 9  cattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgc 66
          |||||||||||||||||||||||  | ||   |||||||||||||||||||||||||||
Sbjct: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84




>24832_cin-mir-126:mirbase
          Length = 81

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 45 ctcgtaccgtgagtaataa 63
          |||||||||||||||||||
Sbjct: 49 ctcgtaccgtgagtaataa 67




>25326_csa-mir-126:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 45 ctcgtaccgtgagtaataa 63
          |||||||||||||||||||
Sbjct: 65 ctcgtaccgtgagtaataa 83




>25475_pma-mir-126:mirbase
          Length = 72

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 45 ctcgtaccgtgagtaataa 63
          |||||||||||||||||||
Sbjct: 44 ctcgtaccgtgagtaataa 62