miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32867_rno-mir-344a-2:mirbase
Length = 107
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 70
Query: 61 agcctgactgtaagctg 77
|||||||||||||||||
Sbjct: 71 agcctgactgtaagctg 87
>32865_rno-mir-344a-1:mirbase
Length = 98
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 72
Query: 61 agcctgactgtaagctgcaa 80
|||||||| |||||||||||
Sbjct: 73 agcctgaccgtaagctgcaa 92
>32866_rno-mir-344a-1:mirbase
Length = 98
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 72
Query: 61 agcctgactgtaagctgcaa 80
|||||||| |||||||||||
Sbjct: 73 agcctgaccgtaagctgcaa 92
>32014_mmu-mir-344-1:mirbase
Length = 95
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13 tttttaccagtcaggctcctggctagattccaggtaccagctggtacctgatctagccaa 72
Query: 61 agcctgactgtaagc 75
|||||||||||||||
Sbjct: 73 agcctgactgtaagc 87
>32017_mmu-mir-344c:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 8 cagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaaagcctga 67
|||||||||| ||||||||| | ||| || || |||||||||||||||| ||||||||||
Sbjct: 17 cagtcaggctgctggctagagtacagctatcagctggtacctgatctagtcaaagcctga 76
Query: 68 ctgtaagctgc 78
| |||| ||||
Sbjct: 77 cagtaaactgc 87
>32016_mmu-mir-344b:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tagccaaagcctgactgtaag 74
|||||||||||||||||||||
Sbjct: 43 tagccaaagcctgactgtaag 63
