miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32026_mmu-mir-345:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
Query: 61 ctaggggtctggagacctgggtttgatctccacagg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggagacctgggtttgatctccacagg 96
>32872_rno-mir-345:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
Query: 61 ctaggggtctggagacctgggtttgatctccacagg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggagacctgggtttgatctccacagg 96
>32873_rno-mir-345:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
Query: 61 ctaggggtctggagacctgggtttgatctccacagg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggagacctgggtttgatctccacagg 96
>27137_eca-mir-345:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 9 ccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactaggggt 68
Query: 69 ctggagacctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggaggcctgggtttga 86
>27138_eca-mir-345:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 9 ccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactaggggt 68
Query: 69 ctggagacctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggaggcctgggtttga 86
>33331_bta-mir-345:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
Query: 69 ctggagacctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggaggcctgggtttga 86
>33332_bta-mir-345:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
Query: 69 ctggagacctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggaggcctgggtttga 86
>34066_ssc-mir-345:mirbase
Length = 80
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 4 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 63
Query: 69 ctggagacctgggtttg 85
|||||| ||||||||||
Sbjct: 64 ctggaggcctgggtttg 80
>34067_ssc-mir-345:mirbase
Length = 80
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 4 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 63
Query: 69 ctggagacctgggtttg 85
|||||| ||||||||||
Sbjct: 64 ctggaggcctgggtttg 80
>28594_hsa-mir-345:mirbase
Length = 98
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
Query: 75 acctgggtttga 86
|||||||||||
Sbjct: 76 gcctgggtttga 87
>30338_ptr-mir-345:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 74
Query: 75 acctgggtttga 86
|||||||||||
Sbjct: 75 gcctgggtttga 86
>30961_ppy-mir-345:mirbase
Length = 98
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
Query: 75 acctgggtttga 86
|||||||||||
Sbjct: 76 gcctgggtttga 87
>26808_cfa-mir-345:mirbase
Length = 60
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 tgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
||||||| | |||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct: 1 tgctgactcttagtccagtgctcgtgatggctggtgggccctgaactaggggtctggag 59
>27857_mml-mir-345:mirbase
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 17 gctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggagac 76
|||||| ||||||| || ||| ||||||||| |||||||||||| |||| ||||||| |
Sbjct: 14 gctgactcctagtcaagggctcgtggtggctggtgggccctgaacgagggttctggaggc 73
Query: 77 ctgggtttga 86
||||||||||
Sbjct: 74 ctgggtttga 83
